Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3556 ATGAAAATGGCTCCAACAATTCTGCCCCTGGTCACCTTATTTTTAGCTTTCTCTGTTTCTTATCTATCGATCGGTGATGCGGAAACAGATGAGAAGCTTAATGGACTCAAGCTTAATTCTCATATTCTTCAGGAGTCAATTGCAAAACAGATTAACGAAAACCCAGAGGCAGGATGGGAGGCTGCTATTAATCCTCGTTTCTCCAACTTTACGGTTGGACAATTTAAGCGCCTTCTTGGAGTCAAACAAGCACCTAAAAAAGAACTGTTAAGTACACCTGTTGTAACTCATCCAAAATCATTAAAATTGCCAAAGGAATTTGATGCAAGGACAGCTTGGTCACAGTGTAGCACTATTGGAAAAATTTTAGATCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTTGAATCATTACAAGATCGTTTTTGCATTCATTTTGACATGAATATATCCCTCTCTGTTAACGACCTTCTTGCATGCTGTGGATTTCTTTGTGGGGCTGGCTGTGATGGGGGGACTCCCATTTATGCATGGCGGTACTTAGCTCACCATGGTGTTGTCACTGAAGAGTGTGACCCATACTTTGATCAAATTGGATGTTCTCACCCTGGTTGTGAGCCAGCATATCAAACTCCCAAGTGCGTTAGGAAGTGTGTAAAGGGAAACCAGATTTGGAAGAGGTCAAAGCACTATAGTGTCAAAGCATATAGGGTCAAGTCTGATCCCCAAGATATAATGGCAGAAGTTTATAAGAATGGGCCTGTTGAAGTTGCATTCACTGTTTTTGAGGATTTCGCTCACTACAAATCAGGAGTTTACAAACATATCACTGGTTCTGCACTAGGCGGTCATGCAGTAAAGTTGATTGGGTGGGGAACAAGTGATGAAGGGGAGGACTATTGGCTTCTTGCAAATCAGTGGAATACAAATTGGGGAGATGATGGCTACTTCAAGATTAAGAGAGGGACAAACGAATGTGGAATTGAAGATGATGTTACCGCGGGTTTACCTTCTACCAAAAATATTGTAAGAGAGGTGACTGACATGGATGTTGATGCTGGTGTTTCATTCTGA 1080 0.4194 MKMAPTILPLVTLFLAFSVSYLSIGDAETDEKLNGLKLNSHILQESIAKQINENPEAGWEAAINPRFSNFTVGQFKRLLGVKQAPKKELLSTPVVTHPKSLKLPKEFDARTAWSQCSTIGKILDQGHCGSCWAFGAVESLQDRFCIHFDMNISLSVNDLLACCGFLCGAGCDGGTPIYAWRYLAHHGVVTEECDPYFDQIGCSHPGCEPAYQTPKCVRKCVKGNQIWKRSKHYSVKAYRVKSDPQDIMAEVYKNGPVEVAFTVFEDFAHYKSGVYKHITGSALGGHAVKLIGWGTSDEGEDYWLLANQWNTNWGDDGYFKIKRGTNECGIEDDVTAGLPSTKNIVREVTDMDVDAGVSF* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3556 359 Gene3D Cysteine proteinases 35 345 - -
Mtr7g3556 359 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 37 345 - -
Mtr7g3556 359 SUPERFAMILY Cysteine proteinases 43 339 IPR038765 -
Mtr7g3556 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 125 136 IPR000169 -
Mtr7g3556 359 SMART pept_c1 103 338 IPR000668 GO:0006508|GO:0008234
Mtr7g3556 359 CDD Peptidase_C1A_CathepsinB 104 337 - -
Mtr7g3556 359 Pfam Peptidase family C1 propeptide 43 83 IPR012599 GO:0004197|GO:0050790
Mtr7g3556 359 Pfam Papain family cysteine protease 103 336 IPR000668 GO:0006508|GO:0008234
Mtr7g3556 359 PANTHER CATHEPSIN B-LIKE PROTEASE 3 37 345 - -
Mtr7g3556 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 284 294 IPR025660 -
Mtr7g3556 359 PRINTS Papain cysteine protease (C1) family signature 125 140 IPR000668 GO:0006508|GO:0008234
Mtr7g3556 359 PRINTS Papain cysteine protease (C1) family signature 286 296 IPR000668 GO:0006508|GO:0008234
Mtr7g3556 359 PRINTS Papain cysteine protease (C1) family signature 302 308 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3556 Mtr-Chr7 52558237 52563548 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3556 K01363 - gmx:100778103 637.106