Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3538 ATGGCGGGGACCGATGACAACATAACACAACAACAATCCGCTGCAAAACCCCAAAAACAACCAAAACAACCAAAACAACCAAAACCACAACAATCAGGTGGTGGAAAGAAGAAGGAAGTGAAGAAAGAAACTGGATTAGGTTTAACCAATAAGAAGGCTGAAAACTTCGGAGAATGGTATTCCGAGGTTGTTGTGAATGGGGAAATGATTGAGTACTATGATATTTCTGGTTGCTATATTCTCAGACCTTGGTCAATGGCTATTTGGGAGATTATGCAAGCGTTTTTTGATCCAGAAATAAAGAAAATGAAGATCAAGAACTGCTACTTCCCTCTGTTTGTTTCTAACACTGTTCTGGAAAAGGAGAAGGACCATATCGAGGGTTTCGCTCCAGAGGTTGCTTGGGTGACCAAATCTGGAGAATCTGATTTAGAGATTCCTATTGCTATTCGTCCAACTAGTGAAACTGTTATGTATCCTTACTACTCTAAGTGGATAAGGGGACATCGTGACTTGCCTTTGAAGCTTAATCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAATCCCACACCATTCATCAGGAGTCGTGAGTTTCTTTGGCAAGAAGGACACACTGCTTTTGCAACAAAGGAGGAAGCAGATACAGAGGTGCTTGAGATTTTGGAATTATATCGGCGTATCTATGAAGAGTATTTGGCAGTTCCTGTCGTAAAGGGTAAGAAAAGTGAGCTTGAGAAGTTTGCTGGGGGACTTTACACTACCAGTGTTGAGGCATTTATTCCAAACACTGGTCGTGGTATACAAGGTGCAACTTCTCATTGTTTGGGACAAAATTTTGCTAAAATGTTTGAGATAAACTATGAAAATGAGAAGGGAGAGAAAGCAATGGTCTGGCAGAACTCGTGGGCCTATAGTACTCGAACTATTGGGGTGATGGTGATGGTTCATGGTGATGACAAGGGATTGGTGCTGCCACCTAAAGTAGCATCAGTTCAAGTCATTGTGATTCCTGTGCCTTACAAAGATGCTGATACTCAAGGAATCTTTGATGCCTGTACCGCAACTGTGAATATGTTGTTGGAAGCAGGAATTCGTGCTGAGTCAGATGCCAGAGACAACTATTCTCCTGGATGGAAATATTCTCAGTGGGAAATGAAAGGTGTTCCTCTAAGGATTGAAATCGGGCCCAAGGATTTAGCAAATAAGCAGGTCCGTGCTGTTCGTCGTGATAGCGGAGCAAAGATCGACATTGGTAATGATGATTTGGTTGTGGAAATAAAGAAGTTGCTCGATAATATTCAACAGAATTTGTTTGATGTCGCAAAACACAAACGAGATGCATGTATTCAGATCATACATACATGGGATGAGTTTGTAGCAGCTTTGAATGAAAAAAAGATGATCTTAGCTCCTTGGTGTGATGAGGAGGAGGTGGAAAAAGATGTCAAAGCAAGGACAAAGGGTGAGACAGGAGCTGCAAAGACACTTTGTAGTCCCTTTGATCAGCCAGAACTCCCCGAAGGCACCGTGTGCTTTGCGTCAGGCAAGCCTGCAAAGAAGTGGTCATACTGGGGCAAAAGTTACTAG 1590 0.4252 MAGTDDNITQQQSAAKPQKQPKQPKQPKPQQSGGGKKKEVKKETGLGLTNKKAENFGEWYSEVVVNGEMIEYYDISGCYILRPWSMAIWEIMQAFFDPEIKKMKIKNCYFPLFVSNTVLEKEKDHIEGFAPEVAWVTKSGESDLEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADTEVLEILELYRRIYEEYLAVPVVKGKKSELEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINYENEKGEKAMVWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDADTQGIFDACTATVNMLLEAGIRAESDARDNYSPGWKYSQWEMKGVPLRIEIGPKDLANKQVRAVRRDSGAKIDIGNDDLVVEIKKLLDNIQQNLFDVAKHKRDACIQIIHTWDEFVAALNEKKMILAPWCDEEEVEKDVKARTKGETGAAKTLCSPFDQPELPEGTVCFASGKPAKKWSYWGKSY* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3538 529 Hamap Proline--tRNA ligase [proS]. 49 529 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Mtr7g3538 529 Pfam Anticodon binding domain 333 429 IPR004154 -
Mtr7g3538 529 MobiDBLite consensus disorder prediction 1 30 - -
Mtr7g3538 529 TIGRFAM proS_fam_I: proline--tRNA ligase 50 529 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Mtr7g3538 529 CDD ProRS_anticodon_zinc 322 529 - -
Mtr7g3538 529 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 148 314 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Mtr7g3538 529 Gene3D - 327 447 IPR036621 -
Mtr7g3538 529 SUPERFAMILY C-terminal domain of ProRS 452 529 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Mtr7g3538 529 SMART ProRS_C_1_2 456 529 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Mtr7g3538 529 CDD ProRS_core_arch_euk 55 316 IPR033721 -
Mtr7g3538 529 SUPERFAMILY Class II aaRS and biotin synthetases 54 320 IPR045864 -
Mtr7g3538 529 Pfam Prolyl-tRNA synthetase, C-terminal 456 529 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Mtr7g3538 529 PANTHER PROLINE--TRNA LIGASE, CYTOPLASMIC-LIKE 16 529 - -
Mtr7g3538 529 Gene3D - 450 529 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Mtr7g3538 529 PRINTS Prolyl-tRNA synthetase signature 107 125 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Mtr7g3538 529 PRINTS Prolyl-tRNA synthetase signature 148 159 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Mtr7g3538 529 PRINTS Prolyl-tRNA synthetase signature 178 186 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Mtr7g3538 529 PRINTS Prolyl-tRNA synthetase signature 188 199 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Mtr7g3538 529 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 88 326 IPR006195 -
Mtr7g3538 529 SUPERFAMILY Class II aaRS ABD-related 321 447 - -
Mtr7g3538 529 Gene3D Bira Bifunctional Protein; Domain 2 49 326 IPR045864 -
Mtr7g3538 529 MobiDBLite consensus disorder prediction 1 44 - -
Mtr7g3538 529 PANTHER PROLYL-TRNA SYNTHETASE 16 529 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3538 Mtr-Chr7 52367139 52372507 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3538 K01881 - gmx:100782067 956.822