Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3479 ATGTCGCGTCGTAATAGCAATGGTAGATCACCCCTCGTCAATCCACAGCGTCAAATCACTTCTTTCTTCACCAAATCCACTTCTCCCCTTTCACCTTCTCTCTCCAAAACCCTAAAATCAAACCCTAATAACCCCATTTCTAAATCTAATCCTAACCCTAGTCCTACCCTAACTACACCTTCACCTCTCAATCCCAATAAACCACACAAACCCCGTCTCGTCATCGACGCTCCTCCTACAATATCACCTCCCCCTTCGGATTCTCCATTCATTGGTAAACGAATCAGGGTTTATTGGCCTTTAGACGAAGCCTGGTACGAAGGTACTGTCAAATCTTTCGATACCGTTACTTCCAAACATCGAATTCGTTACGATGATGATGAAGAGGAAAGTATTGATCTTTCTAAGGAGAAGATTGAGTGGATTCAGGATTCTTCCTCGAAGAAGCTTAAACGCTTGCGGCGTGGTTCTTCTCCTATTAGGAAGATGGTGATTGAGGTGGAAGAATGTCCCAAAGAGGAAAAACAAGAAGAAGAAGATGATGATGATGATAATGATGATTCGGAAGATGAAGATTGGGGAAAAAATGCTGTATTGGAGAATGTTGTGGATGATAATGATGATGAAGATATGGAACTGGAGGAAGAAAATGAAGTTGTAGAGAGTGCTAAAGGAAAGAATAGTAATAAGGTTGAGCCGAAAAAGCGGAAACTAGGCGGAGGAGCAAAAATGGAGCCGATGAAAAAGAGCAAGAGTGGAAATGAAGTTAACAGGGTAGCTGTTAAGCTCTCACCATTGGCGCCTTTGAATAATTTGGAGGTTAGAAAGACATCTGATGGCGCAGACAATGTTGCAACTGGTGATTCCTCTGAAAGATTTGCGCTCCGCGAAGCTCAGAAGTTTCACTTTCTAGGAAAAGATCGCAGGGATGCCAAACGAAGGCGTCCAGGAGATGAAAATTATGACTCAAGAACTCTCTACTTGCCTCCAGATTTTGTGAGGAATTTGTCAGGTGGCCAGAAACAATGGTGGGAATTCAAGTCAAAACACATGGACAAAGTTTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAAATGGATGCACATGTAGGAGCAAAAGAGCTTGAATTGCAGTATATGAGGGGAGAGCAACCTCATTGTGGTTTTCCAGAGAAGAATTTCACAGTGAATGTAGAGAGACTAGCTAGAAAGGGTTATCGAGTTCTTGTTGTAGAGCAGACTGAAACACCTGAACAGATGGAGCTTCGGCGCAAGGAGAGCGGCTCTAAAGATAAGGTTGTGAGACGGGAAATATGCGCAGTGGTTTCAAAAGGCACATTAATAGATGGGGAGTTTATGTCAACCAATCCTGAAGCTGCATATTTAATGGCACTGACTGAGTACTGTGAGAACAATCCAAATGAAATGTCAGAGCGCACGTACGGTGTTTGTGTAGTTGATGTCGCTACTAGCAGAGTCATTCTTGGGCAGTTCAACGATGACTCAGAGTGCAGTGCCTTGTGCTCTATCTTGTCTGAGATCAGGCCAGTTGAAATTGTGAAACCTGCTAAACTACTCAGTGCTGAAACAGAAAGGGCACTGCTGAAACACACGAGAAACCCTCTAGTGAATGAGTTAATTCCAAATGTGGAATTCTGGGATGCTGATAAAACTTTGGATCATCTGAAGAGAATTTATGGCCACAATAACGATGTTAGTGCTCAAGATGGCGGGTTAGATTGTCTGCCAGATGTTTTAGTGGAGCTGGTGAAAACAGATCATGACAGTAGAAGTGCACTCTCAGCACTTGGGGGTGCTCTCTATTATTTGAAACAGGCTTTCCTAGATGAGCAGTTGCTTAGATTTGCGCAGTTTGAGTTGCTTCCATGTTCTGTTTTCAGTGGTCTTGCTTCAAAACCATACATGGTTCTTGATGCTGTAGCCCTAGAGAATCTCGAGATATTTGAGAATAGCAGAAATGGAGAGTCTTCAGGCACGCTCTATGCTCAATTAAACCAATGTGTTACGGCGTTTGGGAAGAGACTGCTAAAGTCATGGCTTGCAAGACCGTTATATCACGTGGAGTCAATAAAGGAACGCCAGGAAGCTGTTGCTGGTTTAAAGGGAGTAAATCTACCTCACACATTAGAATTTCGAAAAGCATTATCAAAGTTACCTGACATGGAGCGGTTGCTGGCACGGGTGCTCTCTTCTAGGGATGCTAGTGGAAGGAATGCTAATAAAGTGGTTCTGTATGAGGATTCATCAAAGAAACAACTGCAAGAGTTTATTTCAGCCCTGCGTGGTCTTGAACTTATGGCACAAGCTTGCTTGTCACTCGGTGTTATTTTGAATAATGTCAAATCCAGACAGCTTAGTCATCTTTTAACACCTGGTAAAGGTCTTCCTGATGTAAGCATGGATCTGAATCATTTCAAGGATGCCTTTGATTGGGTGGAAGCCAATAACTCCGGCCGTATAATACCTCATGAAGGAGTTGACAAAGAATATGATTCAGCTGGTAAGGCAGTTAATGAGATTGAGTCCAGTTTGTTAGATCATCTCAAGGAACAAAGGAAATTACTTGGAAGCACATCAATCTCTTATGTTGGTATTGGAAAGGACACATACCTATTGGAAGTGCCTGAAAATTTGTCTCAGAATATTCCTCGGGATTACGAGAGGCGTTCATCCAAAAAAGGTTTCGTTAGGTATTGGACTCCAGATATTAAAATATTTTTGAAAGAGCTCTCTCATGCTGAATCTGAAAGGGAGACCTTATTGAAAAGTACATTTCAGAGAATGATAGAGCGTTTTTGTGAACATCACACTCAGTGGAAGCAGTTGGTGTCTGCAACTGCTGAGTTGGATGTTTTGATCAATTTAGCTATTGCCAGTGATTACTATGAAGGACCAACCTGCAGACCAAGTTTTGTTGGGACCTTATGTACAAATGAAGCTCCCTACATCTATGCTAAAAGTCTGGGACACCCCGTTCTTAGGAGTGATACCTTAGGAAAGAGTGCCTTTGTACCTAATGACATAACCATAGGTGGTCCAGACCAGGCCTCCTTTATTCTTCTTACAGGTCCTAACATGGGTGGGAAGTCAACTCTTCTTCGCCAAGTTTGCTTGGCTGTGATTTTGGCCCAGGTAGGGGCTGATGTCCCTTCAGAAAGTTTTGAATTGTCTCCTGTGGACCGAATTTTTGTTCGGATGGGTGCCAGAGATAATATCATGGCTGGCCAAAGTACATTTTTAACCGAGCTTTCAGAAACTGCAACAATGCTGTCATCAGCCACTCGTAATTCATTGGTGGCTCTGGATGAGCTTGGGCGTGGGACCTCAACGTCTGATGGACAAGCCATTGCGGAATCAGTATTAGAACATCTTGTACGTAGCGTGCAGTGTCGTGGATTGTTTTCTACACACTATCATCGATTAGCTATAGATTATCTCAAAGATCCCAAGGTCTGTCTCGCTCACATGGCATGCCAAGTTGGTAGTGGAAATGAAGGTTTGGACGAAGTCACCTTTCTTTACAGGCTGTCCGCAGGTGCTTGCCCCAAGAGCTACGGTGTTAATGTTGCTCGGTTAGCTGGACTACCCACTTCTGTGCTTCAGAAGGCTGATGCCAAGTCCAGAGAATTTGAGGCCACGTATGGTAAATACAGAACTGAACCAAACTCTTCCAATCAAAGTTGGGTTGATGAGATAATAGTCTTGGTACAAAAATTGAACAATGCTGCCAATAATTTGAGTTGCGAGGAGATGGTTTCCGATCACTCTATAGTAAAGCTTCAGCGTGAAGCAAGAGAACTGCTAGAACGATGTTAA 3843 0.4296 MSRRNSNGRSPLVNPQRQITSFFTKSTSPLSPSLSKTLKSNPNNPISKSNPNPSPTLTTPSPLNPNKPHKPRLVIDAPPTISPPPSDSPFIGKRIRVYWPLDEAWYEGTVKSFDTVTSKHRIRYDDDEEESIDLSKEKIEWIQDSSSKKLKRLRRGSSPIRKMVIEVEECPKEEKQEEEDDDDDNDDSEDEDWGKNAVLENVVDDNDDEDMELEEENEVVESAKGKNSNKVEPKKRKLGGGAKMEPMKKSKSGNEVNRVAVKLSPLAPLNNLEVRKTSDGADNVATGDSSERFALREAQKFHFLGKDRRDAKRRRPGDENYDSRTLYLPPDFVRNLSGGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELELQYMRGEQPHCGFPEKNFTVNVERLARKGYRVLVVEQTETPEQMELRRKESGSKDKVVRREICAVVSKGTLIDGEFMSTNPEAAYLMALTEYCENNPNEMSERTYGVCVVDVATSRVILGQFNDDSECSALCSILSEIRPVEIVKPAKLLSAETERALLKHTRNPLVNELIPNVEFWDADKTLDHLKRIYGHNNDVSAQDGGLDCLPDVLVELVKTDHDSRSALSALGGALYYLKQAFLDEQLLRFAQFELLPCSVFSGLASKPYMVLDAVALENLEIFENSRNGESSGTLYAQLNQCVTAFGKRLLKSWLARPLYHVESIKERQEAVAGLKGVNLPHTLEFRKALSKLPDMERLLARVLSSRDASGRNANKVVLYEDSSKKQLQEFISALRGLELMAQACLSLGVILNNVKSRQLSHLLTPGKGLPDVSMDLNHFKDAFDWVEANNSGRIIPHEGVDKEYDSAGKAVNEIESSLLDHLKEQRKLLGSTSISYVGIGKDTYLLEVPENLSQNIPRDYERRSSKKGFVRYWTPDIKIFLKELSHAESERETLLKSTFQRMIERFCEHHTQWKQLVSATAELDVLINLAIASDYYEGPTCRPSFVGTLCTNEAPYIYAKSLGHPVLRSDTLGKSAFVPNDITIGGPDQASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPSESFELSPVDRIFVRMGARDNIMAGQSTFLTELSETATMLSSATRNSLVALDELGRGTSTSDGQAIAESVLEHLVRSVQCRGLFSTHYHRLAIDYLKDPKVCLAHMACQVGSGNEGLDEVTFLYRLSAGACPKSYGVNVARLAGLPTSVLQKADAKSREFEATYGKYRTEPNSSNQSWVDEIIVLVQKLNNAANNLSCEEMVSDHSIVKLQREARELLERC* 1281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3479 1280 MobiDBLite consensus disorder prediction 218 252 - -
Mtr7g3479 1280 Gene3D - 85 140 - -
Mtr7g3479 1280 Gene3D - 976 1256 IPR027417 -
Mtr7g3479 1280 Gene3D - 644 965 - -
Mtr7g3479 1280 Pfam MutS family domain IV 834 925 IPR007861 GO:0005524|GO:0006298|GO:0030983
Mtr7g3479 1280 Gene3D DNA repair protein MutS, domain I 295 456 IPR016151 GO:0005524|GO:0006298|GO:0030983
Mtr7g3479 1280 MobiDBLite consensus disorder prediction 162 254 - -
Mtr7g3479 1280 PANTHER DNA MISMATCH REPAIR PROTEIN MSH6 232 1253 - -
Mtr7g3479 1280 Pfam MutS domain II 463 616 IPR007860 GO:0005524|GO:0006298|GO:0030983
Mtr7g3479 1280 Gene3D - 810 941 - -
Mtr7g3479 1280 Pfam MutS domain V 1029 1219 IPR000432 GO:0005524|GO:0006298|GO:0030983
Mtr7g3479 1280 SUPERFAMILY DNA repair protein MutS, domain II 457 659 IPR036678 GO:0005524|GO:0006298|GO:0030983
Mtr7g3479 1280 SUPERFAMILY Tudor/PWWP/MBT 89 132 - -
Mtr7g3479 1280 Pfam MutS domain I 339 452 IPR007695 GO:0005524|GO:0006298|GO:0030983
Mtr7g3479 1280 MobiDBLite consensus disorder prediction 1 89 - -
Mtr7g3479 1280 MobiDBLite consensus disorder prediction 172 191 - -
Mtr7g3479 1280 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 232 1253 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Mtr7g3479 1280 MobiDBLite consensus disorder prediction 203 217 - -
Mtr7g3479 1280 Gene3D MutS, connector domain 461 641 IPR036678 GO:0005524|GO:0006298|GO:0030983
Mtr7g3479 1280 SUPERFAMILY DNA repair protein MutS, domain I 325 448 IPR016151 GO:0005524|GO:0006298|GO:0030983
Mtr7g3479 1280 SMART TUDOR_7 87 145 IPR002999 -
Mtr7g3479 1280 SMART DNAend 664 1005 IPR007696 GO:0005524|GO:0006298|GO:0030983
Mtr7g3479 1280 PIRSF Msh6 1 1270 IPR017261 GO:0006298|GO:0030983
Mtr7g3479 1280 Pfam MutS domain III 650 965 IPR007696 GO:0005524|GO:0006298|GO:0030983
Mtr7g3479 1280 MobiDBLite consensus disorder prediction 1 54 - -
Mtr7g3479 1280 SUPERFAMILY DNA repair protein MutS, domain III 647 971 IPR036187 -
Mtr7g3479 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 988 1220 IPR027417 -
Mtr7g3479 1280 SMART mutATP5 1025 1217 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3479 Mtr-Chr7 51767009 51775456 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3479 K08737 - gmx:100811104 1899.4