Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3417 ATGGTGGCAATGGCCATGGTTGCAGCGCAACAATTCCTATGCTTCTCAAAATCAAATTGTAGAATCACAACAACAAGACCATGCATTCCTCTTCATCATTTCAGCTCAACACTTCTACGCTCACGCAATAACAAGATTCAGTTTCCACTCATTTCATACTCTTCTTCTTCATCACAGACACCAGAAACTGAAACTGAAACTGCTGAATCTTGTGTCAATTTGGGTCTTGAGCTATTTTCCAAAGGAAAGGTTAAAGATGCTTTGGCCCAGTTTGAAACAGCACTTTCTTTGAATCCTAATCCTGTTGAGGCCCAAGCTGCATTCTATAACAAAGCTTGCTGTCATGCATACAGAGGAGAAGGAAAGAAAGCTGCCAATTGTCTCCGCACTGCTTTGAGGGAATACAATCTAAAATTTGGTACAATTCTCAATGATCCAGACTTGGCCTCCTTCAGAGCTTTGCCTGAATTCAAAGAACTGCAAGAAGAGGCGAGGCTGGGTGGGGAAGATGTTGGCTCCAGTTTTCGAAGAGATCTGAAACTTATCAGTGAAGTTCAAGCACCATTTCGTGGGATTAGAAGATTCTTTTACGTAGCATTTACAGCAGCTGCAGGAATATCGTTATTTTTTAATGTACCGAGGATATTGCGTGCAATTCAAGGGGGTGACGGTGCTCCAGATGTCTTGGAAACTGCTGGCAATGCTGCCGTTAACATTGGAGGTATTGTTGTTTTTGTGGCATTATTCCTTTGGGACAATAAAAAAGAGGAGGAGCAGATTGCGCAAATATCCCGAAATGAGACGCTATCAAGATTGCCTTTGCGCCTGTCAACCAATCGCGTAGTTGAACTCGTGCAGCTAAGGGACACAGTTAGGCCGGTTATAATAGCTGGGAAAAAAGAAACAGTGACTTTAGCTTTGCGCAAGGCAGAGAGATTTCGCACTGATCTCCTTAGACGTGGTGTTTTGTTAGTTCCGGTCATCTGGGGAGAAGGTAGAGAAACCAAAATTGAAAAGAAAGGTTTTGGCCTTCAACCAAAGGCTGCTGAGGCTCTTCCATCTATCGGGGAAGATTTTGAGAAGCGAACACAGTCCGTAACTGCACAATCAAAATTGAAAGCTGAAGTTAGGTTCAAGGCTGAGGCTGTCTCGCCAGCAGAATGGGAATGGTGGATAAGAGATCAACAGAAGTCTGAAGGAGTTCCAGTTGGTGAAGACGTGTACATAATACTGCGCCTAGATGGGCGAGTTCGAAGATCAGGGAGAGGTATACCTGACTGGGACCAAATCGCAAAGGAGCTTCCACCAATGGAAGCAATTTTAAGCAAGCTGGAAAGATGA 1341 0.44 MVAMAMVAAQQFLCFSKSNCRITTTRPCIPLHHFSSTLLRSRNNKIQFPLISYSSSSSQTPETETETAESCVNLGLELFSKGKVKDALAQFETALSLNPNPVEAQAAFYNKACCHAYRGEGKKAANCLRTALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDVGSSFRRDLKLISEVQAPFRGIRRFFYVAFTAAAGISLFFNVPRILRAIQGGDGAPDVLETAGNAAVNIGGIVVFVALFLWDNKKEEEQIAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVIIAGKKETVTLALRKAERFRTDLLRRGVLLVPVIWGEGRETKIEKKGFGLQPKAAEALPSIGEDFEKRTQSVTAQSKLKAEVRFKAEAVSPAEWEWWIRDQQKSEGVPVGEDVYIILRLDGRVRRSGRGIPDWDQIAKELPPMEAILSKLER* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3417 446 Pfam Tetratricopeptide repeat 68 100 IPR013105 -
Mtr7g3417 446 Pfam Low psii accumulation1 / Rep27 176 253 IPR021883 -
Mtr7g3417 446 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 4 446 - -
Mtr7g3417 446 SMART tpr_5 105 138 IPR019734 GO:0005515
Mtr7g3417 446 SMART tpr_5 68 101 IPR019734 GO:0005515
Mtr7g3417 446 Gene3D Tetratricopeptide repeat domain 38 154 IPR011990 GO:0005515
Mtr7g3417 446 ProSiteProfiles TPR repeat profile. 68 101 IPR019734 GO:0005515
Mtr7g3417 446 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 4 446 - -
Mtr7g3417 446 SUPERFAMILY TPR-like 63 134 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3417 - - gmx:100784188 727.243