Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3413 ATGCATTTTTTCTTCTTTATTTCATTACTCTCTAAACAGATGAATGGGAACATGAGTTGTTTGGCAGAAAGAGTGGTAAAACTGCTGAAAAGTTTCTGCCGTACACAAATTCATGTAAAACAAATTCAAGCACAAATCATAATTCACAACCTTCAATCACACACAACAATCGCAGAGCACTTAATCACAGCATCTCAATCCCATAACCTTCTCAACTATGTTTCACCTCTCTTCACTCACCTCATTCCAAAACCACACGTTTTCATCTTCAACTCTCTCATCAGAGCCTTCTCTCATTCTCATATCCCCAACACCCCTCTCTCTCTATACTCCCACATGCACAAAAACTCCATTCTCCCCAATAACTTCACATTCCCTTTTCTTTTTAAATCACTTTCCGACTCACACGACTTTGTTCAATCACAATGTGTATACACTCATGTTATTAAACTCGGTTATGTTAATGATATTTATGTTAATAACTCTCTTCTTGATGTATATGCCTCTTATGGGTGTTTGGAACTTTGTCGCCAACTGTTTGATGAAATGCCTCAGAGAGACGTTGTGTCGTGGACTGTAATGATAATGGGTTATCGGAACGGTGGGAAGTATAATGATGCTTTGCTTGTGTTTGAACAAATGCAGTATGGGGGTGTGGTGCCGAATAGGGTGACGATGGTGAATGCTTTGTCTGCTTGTGCTAGCTCTTGTGCTATTGAAATGGGAGTGTGGATAGATGATATGGTGAGGAGGAATGGGTGGGAATTGGATGTGATTTTGGGGACGGCGTTGATTGATATGTATGTCAAGTGTGGGAGAGTGGAAGAGGGGTTGAAGGTTTTCTGTGATATGAAGGAAAAGAATGTGTTTACTTTGAATGTTGTTATTAAAGGGTTAGCTTTGGCTAAGAGTGTTGAGGAGGCTCTTTTGTGGTTTAATAGGATGGAGTTGGATGGAGTTAGAGCGGATGAAGTGACTTTGGTCACGGTTCTTTCTGCGTGTAGTCATTCGGGTTTGGTGGAAAAGGGTCGATTTATCTTTAGTATGTTGGTTGATGGAAAGTATGGATTTCTTCCTAATGTCAAACACTATGCTTGTATGGTTGATCTCTTGGCACGTGCTGGTCAATTGCAAGAGGCTTTTGACATCATCAAATGTATGCCGTTTGAGCCGACGGCAGCTATGTGGGGATCCTTATTGCTTGGTTCGAAATCTCGTGATGACTTGGAATTCAGTGAGTTTGCGGCTACAAAATTGGTTGAGTTGGAGCCATATAACACTGCCTATTATGTTCAACTGTCAAATCTGTATGCAGAGGCCGGAAGATGGAGCGATGTTGAGAGGATAAGAGGAATGATGAAAGAAAGAGGACTGACTAAGGACTTAGGATGTAGTTCTGTGGAGGTTGAGCATCAAAGGCATGGCAGTGAACTCTTGGCATAG 1443 0.4137 MHFFFFISLLSKQMNGNMSCLAERVVKLLKSFCRTQIHVKQIQAQIIIHNLQSHTTIAEHLITASQSHNLLNYVSPLFTHLIPKPHVFIFNSLIRAFSHSHIPNTPLSLYSHMHKNSILPNNFTFPFLFKSLSDSHDFVQSQCVYTHVIKLGYVNDIYVNNSLLDVYASYGCLELCRQLFDEMPQRDVVSWTVMIMGYRNGGKYNDALLVFEQMQYGGVVPNRVTMVNALSACASSCAIEMGVWIDDMVRRNGWELDVILGTALIDMYVKCGRVEEGLKVFCDMKEKNVFTLNVVIKGLALAKSVEEALLWFNRMELDGVRADEVTLVTVLSACSHSGLVEKGRFIFSMLVDGKYGFLPNVKHYACMVDLLARAGQLQEAFDIIKCMPFEPTAAMWGSLLLGSKSRDDLEFSEFAATKLVELEPYNTAYYVQLSNLYAEAGRWSDVERIRGMMKERGLTKDLGCSSVEVEHQRHGSELLA* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3413 480 PANTHER - 16 474 - -
Mtr7g3413 480 Gene3D Tetratricopeptide repeat domain 19 148 IPR011990 GO:0005515
Mtr7g3413 480 Gene3D Tetratricopeptide repeat domain 340 471 IPR011990 GO:0005515
Mtr7g3413 480 Gene3D Tetratricopeptide repeat domain 149 243 IPR011990 GO:0005515
Mtr7g3413 480 Gene3D Tetratricopeptide repeat domain 244 339 IPR011990 GO:0005515
Mtr7g3413 480 TIGRFAM PPR: pentatricopeptide repeat domain 262 289 IPR002885 -
Mtr7g3413 480 TIGRFAM PPR: pentatricopeptide repeat domain 290 323 IPR002885 -
Mtr7g3413 480 TIGRFAM PPR: pentatricopeptide repeat domain 189 222 IPR002885 -
Mtr7g3413 480 TIGRFAM PPR: pentatricopeptide repeat domain 161 189 IPR002885 -
Mtr7g3413 480 Pfam PPR repeat family 186 234 IPR002885 -
Mtr7g3413 480 Pfam PPR repeat family 257 300 IPR002885 -
Mtr7g3413 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Mtr7g3413 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Mtr7g3413 480 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 16 474 - -
Mtr7g3413 480 Pfam PPR repeat 364 387 IPR002885 -
Mtr7g3413 480 Pfam E motif 408 468 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3413 Mtr-Chr7 51227117 51229609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3413 87 474 Glycoside Hydrolase AT3G49170 32.992 2.05e-60 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3413 - - lja:Lj0g3v0239469.1 682.174