Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3400 ATGAACAGCTTAACGGCGAGCTTCACAGCTCGAATATATGGCACACGCTGCGATGTAGTTCTGTTAAGAAACCGTTCCGTTCACCAATTCAATAACAGACGCGTCACACTTCTACCCACTCTCACTTCTACAAGATTCGTTTGCATGGCGGAACCTTATCTGTTATTGAAGCTTGAATCTGCTGAAAAGACATGGAAAGATTTATCGGTGAAGCTTGCTGATCCAGACATTGTTTCTAATCCTAGTGAGTATCAGAAGCTAGCACAGTCCGTATCAGAGCTTGACGTGGTTGTGTCCTTGTATCAGAAATTTAAAGACTGTGAGAAGACTCTTGAAGAAACCCAAGCTTTAGCAAAGGATGCTGGCAATGACCAGGATATGACGGAAATGATATCTTACGAAATTGAATCTTTGTCCAAGCAACTCTCTGAGCTAGAGGAAAAACTGAAGGTTTTACTGCTTCCCAGTGATCCTCTGGATGAAAGAAACATAATGCTTGAAGTGAGGGCGGGTACTGGTGGCGACGAGGCTGGAATATGGGCTGGTGATCTTGTCCGAATGTATGAAAAATTTAGTGAACTTAATTCTTGGAAGCATTCTGCCATCTCATGCTCTGAGGCAGAAAAAGGGGGATACAAAACTTATGTGATGGAGATAAAAGGAAATCGTGTCTACAGTAAATTAAAATTTGAATCCGGTGTCCACAGAGTTCAACGTGTTCCTCTAACAGAAACACAAGGCCGTGTACATACTTCTACCGCAACAGTGGCCATTATGCCAGAGGTTGATGAAGTTGAAGTTGTAATTGACCCAAAAGATATTGAAGTGACAACGGCGCGTTCTGGGGGTGCTGGAGGCCAGAATGTTAATAAGGTTGAAACAGCAATTGATCTTGTTCATAAACCAACGGGAATACGCATCTTTTGTACTGAACAAAGGACTCAGATTCAGAACAAGAATCTTGCTTTTAAGTTACTGCGAGCCAAACTATATGAGATAAAGGTAAGGGAGCAGCAAGAGTCAATACGAAATCAAAGAAAATCACAGGTTGGTACAGGAGCACGTTCAGAAAAAATTCGGACATACAATTATAAGGACAACAGGGTTACTGACCACAGATTGAAGCAGAACTTTTCTCTCACCTCTTTTCTGGGTGGTAACATAGAGGAGGCTGTTCAGTCTTGTGTTGCAATGGAACAAAAGGAGCTTATGGAAGAACTTGTTGAGTCTATGGGCGCCACTGCCAGATGA 1251 0.4245 MNSLTASFTARIYGTRCDVVLLRNRSVHQFNNRRVTLLPTLTSTRFVCMAEPYLLLKLESAEKTWKDLSVKLADPDIVSNPSEYQKLAQSVSELDVVVSLYQKFKDCEKTLEETQALAKDAGNDQDMTEMISYEIESLSKQLSELEEKLKVLLLPSDPLDERNIMLEVRAGTGGDEAGIWAGDLVRMYEKFSELNSWKHSAISCSEAEKGGYKTYVMEIKGNRVYSKLKFESGVHRVQRVPLTETQGRVHTSTATVAIMPEVDEVEVVIDPKDIEVTTARSGGAGGQNVNKVETAIDLVHKPTGIRIFCTEQRTQIQNKNLAFKLLRAKLYEIKVREQQESIRNQRKSQVGTGARSEKIRTYNYKDNRVTDHRLKQNFSLTSFLGGNIEEAVQSCVAMEQKELMEELVESMGATAR* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3400 416 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 280 296 IPR000352 GO:0003747|GO:0006415
Mtr7g3400 416 PANTHER PEPTIDE CHAIN RELEASE FACTOR APG3, CHLOROPLASTIC 9 414 - -
Mtr7g3400 416 Gene3D - 48 158 - -
Mtr7g3400 416 TIGRFAM prfA: peptide chain release factor 1 50 408 IPR004373 GO:0006415|GO:0016149
Mtr7g3400 416 PANTHER LD18447P 9 414 - -
Mtr7g3400 416 Gene3D - 264 353 - -
Mtr7g3400 416 Pfam RF-1 domain 263 373 IPR000352 GO:0003747|GO:0006415
Mtr7g3400 416 Hamap Peptide chain release factor 1 [prfA]. 54 408 IPR004373 GO:0006415|GO:0016149
Mtr7g3400 416 SMART PCRF_a_2 116 231 IPR005139 GO:0006415
Mtr7g3400 416 Pfam PCRF domain 62 256 IPR005139 GO:0006415
Mtr7g3400 416 SUPERFAMILY Release factor 63 404 IPR045853 -
Mtr7g3400 416 Coils Coil 128 148 - -
Mtr7g3400 416 Gene3D - 160 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3400 Mtr-Chr7 51068544 51075157 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3400 K02835 - gmx:100777225 645.966