Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3343 ATGTACAAAATTATAGCTAAGCTGTTAGCAAACAGATTGAGATTGGTGATTGGTAGTGTGATTTCTGAAACACAGTCTGCTTTTATTAAGAATAGACAGATTCTTGATGGTATTCTTATAGCCAATGAGGTGGTGGATGAAGCTAAAAAGTTTAAGAAAGATCTTATGTTGTTTAAGGTGGATTTTGAAAAAGCGTACGACTCTGTTGAATGGGATTATTTGAACTCGGTTATGGAGAGAATGTCGTTTCCTGTCTTATGGAGAAAATGGATTAGAGAATGTGTGGGTACTGCTACAGCTTCTGTGCTTGTTAATGGTAGTCCTACTGATGAATTTCACCTGTGCAGGGGCTTGCGTCAGGGGGATCCCTTGTCCCCTTTTTTGTTCCTCATTGCGGCTGAGGGTCTTCAAACGTTGATGAAAGTTATGGTTGACAATCAGTTGTTTACGGGTTGGGCTAATGTTCGGGCTCTTCGTGCGACTCTTGCCATTTTTGAGTTGATGTCCGGTTTGAAAGTGAATTTCAATAAAAGCTTGTTGGTGGGTATTAATATCTCTGATTCTTGGTTGAGTGAGGCTGCCTCAGTGTTGAGTTGTAAAGTAGGTAAGATTCCTTTTTTGTATCTAGGTATGCCTATTGGGGGTAATCCGCGGAGACTTTCGTTTTGGGATCATGTCGTGAATCGTATTAAATCTAGATTGTCGGGGTGGAATAGCCGGTTTCTCTCGTTTGGTGGTCGCTTGATCCTCCTGAAAGCCGTTTTGACTTCTCTGCCTGTTTATGCTCTTTCCTTCTTTAAAGCTCCAACAGATAGATGGTTGTGGCTACCTGACCCTGTGGGGGGTTATACTGTTCGAGGAGCTTATGTTCTATTAACAGAGGGTGCTCATCCTCTTTTGGCCGAAGCAATGGAGCTAGTATGGCATCGTCAGGTCCCCTTAAAGGTCTCGATTTTTGCTTGGAGACTTCTCCGGGATCGGTTACCTTCAAAAGCAAATTTGGCAGCTCGTGGTGTTCTCAGTTCTGAGGCGACTCTTTGTGTTATGGGTTGTGGTCATGTTGAAACGGCCGAACATTTATTTTTATTTTGCCCAAATACTGTTTTGTTGTGGCAGCAGGTGCGCAATTGGCTAGGTTCTATGGGGGCGGATCCGAATAACCTTCATGATCACTTAGTGCAGTTTACTTACTTGACAAGTGTTGGTAAAGCTAAACGTTCTTTTCTGCAGCTAATTTGGATTCTGTGTACTTGGATTGTGTGGAACGAACGTAATAACCGCTTGTTTGGTAATGTTGTAACGAACGTCCCAAGGTTATTGGATAAGTATATTAGTAGTAGACAGAAGAAGAAACTAAGAACGCATATTTTCTTCGACGTTTTTCCATCAAGTCGAATCATTGCTTTCTGCATTGATCATACTCCAAAATTTCTACCTTATGCCATCAAAGTTTTCTCCAATCCCAATATCTTCATTTTCAACGCATTGATTCTTTTCATTATAATATAACAACGCATTGGTCTTTTACCTTATAATATAACAAACCCTTTTTTGGTTAAAGCTTGTGCTCAACTTGAAAGTTTGAAAATGGGTATGCAAGTTCATGGTCAAGTAGTGAAGTATGGTTTTGGAAGTGATTTTCATGTTCAACGGTCGCTTGTTTGTATGTATGGTTGTTTATGTGATTTAATGGCTGCAAAATGCATTTTTAAGATGATGGGTCGATTTGATGTTGCTTCTTGGACTTGTATGATTAAGGGTTATTTTAAATGTGGTGATGTTGATTCTGCACGTAAACTGTTTGATAGAATGCCTGTGAAAAATTTGGTGACTTGGAGTACTATGATTAACGGTTATTTGCGGAATAATTGTTTTGATAAAGCTGTTGAAATATTTGAGATTCTTATAGATGAAGGGTTGGTGGCTAATGAGGTTGGTGCGGTATCTGCTTGTGCTCATTTAGGTGCTCTTGCGGCTGGGGAGAAAGCTTATGAGCATGCGATTAGAATTAATTTGGATTTGAATGTGATTCTTGGGACGGCGATCGTTGATATGTATGCAAGATGTGGGAATGTTGAGAAAGCTGTCCGGGTTTTCGAGGAAATGAAAGAGAAGGATGTAATTAGTTGGACAAGTTTGATTTCTGGAGTAGCTATGCATGGTTATGCAGAGGAAGCGCTTGAGTATTTTTATGTAATGGTGAAAAATGGGATAGTTCCTAGAGATATTACTTTTACAGCGGTTTTGAAAGCTTATAGTCATGGAGGGCTGGTAGAAAAGGGTCAAGAAATATTTGAAAGCATGAAAAGGGATTATAGGTTAGAGCCGAGATTGGAACATTATGGATGTATGGTTGATCTTCTTGGAAGGGCAGGAAAGTTGGAAGAGGCGGAGAATTTTATTCTTGAAATGCCTATAAAACCAAATGCTCCAGTATGGGGAGGAGCATTGCTAGGAGCCTGCAGGATTCACAGAAATGTTGAAGTTGGAGAAAGGGTTGGAACGATTTTGATTGAGATGAAACCAGAACATAGTGGTTATTATGCGTTGCTGTCGAACATATATGCGCGTACAAACAAGTGGAAAGATGCTACTGTCATGAGAAGATTAATGAAGGAAAAAGGGGTTAGAAAACAACCTGGATATAGTCTCATTGAGATAGACGGAAAAACTCATGAGTTTACAATTGGAAATAAAAGACATCCAGAAATAGACAAAATAGAAAGAATGTGGGAAAAAATACTGCAAAAAATAAAGTTAGCAGGGTACATGGGAAATACTAGTGAGGCATTGTTTGACATAGATGAGGAGGAAAAAGAAGATGCACTTCACAGGCATAGTGAGAAACTGGCCATTGCCTATGGAATTATGAAGATTCAAGCTCCTGGGACTATTCGGATTGTGAAAAACTTGCGTGTCTGTGAAGATTGTCACACAGCTACCAAGTTTATCTCGAAGGTTTTTGATGTAGAGTTAATTGTGAGAGATAGAAACAGATTTCATCATTTTAAAAAGTATCATGTTTGCATTGGTTTCAACAACATTTTGACTTTTAAAAAGTTAAATTTATCACTTTTCACCATTTTCCAATACTATAATTCTATTTTTATCTCCTTATCCAATGCCCCAAGGGCAATGGTTAGCAATCTCCTTTTAAAAATGGTGTATGTTCTTGTATGGATTACTGGTAAGAGAGGTATGCAATTTCTAAGTTTCAGAGATGCATTGCAAATGGAAGGAAGGAAGATGTAG 3252 0.3905 MYKIIAKLLANRLRLVIGSVISETQSAFIKNRQILDGILIANEVVDEAKKFKKDLMLFKVDFEKAYDSVEWDYLNSVMERMSFPVLWRKWIRECVGTATASVLVNGSPTDEFHLCRGLRQGDPLSPFLFLIAAEGLQTLMKVMVDNQLFTGWANVRALRATLAIFELMSGLKVNFNKSLLVGINISDSWLSEAASVLSCKVGKIPFLYLGMPIGGNPRRLSFWDHVVNRIKSRLSGWNSRFLSFGGRLILLKAVLTSLPVYALSFFKAPTDRWLWLPDPVGGYTVRGAYVLLTEGAHPLLAEAMELVWHRQVPLKVSIFAWRLLRDRLPSKANLAARGVLSSEATLCVMGCGHVETAEHLFLFCPNTVLLWQQVRNWLGSMGADPNNLHDHLVQFTYLTSVGKAKRSFLQLIWILCTWIVWNERNNRLFGNVVTNVPRLLDKYISSRQKKKLRTHIFFDVFPSSRIIAFCIDHTPKFLPYAIKVFSNPNIFIFNALILFIII*QRIGLLPYNITNPFLVKACAQLESLKMGMQVHGQVVKYGFGSDFHVQRSLVCMYGCLCDLMAAKCIFKMMGRFDVASWTCMIKGYFKCGDVDSARKLFDRMPVKNLVTWSTMINGYLRNNCFDKAVEIFEILIDEGLVANEVGAVSACAHLGALAAGEKAYEHAIRINLDLNVILGTAIVDMYARCGNVEKAVRVFEEMKEKDVISWTSLISGVAMHGYAEEALEYFYVMVKNGIVPRDITFTAVLKAYSHGGLVEKGQEIFESMKRDYRLEPRLEHYGCMVDLLGRAGKLEEAENFILEMPIKPNAPVWGGALLGACRIHRNVEVGERVGTILIEMKPEHSGYYALLSNIYARTNKWKDATVMRRLMKEKGVRKQPGYSLIEIDGKTHEFTIGNKRHPEIDKIERMWEKILQKIKLAGYMGNTSEALFDIDEEEKEDALHRHSEKLAIAYGIMKIQAPGTIRIVKNLRVCEDCHTATKFISKVFDVELIVRDRNRFHHFKKYHVCIGFNNILTFKKLNLSLFTIFQYYNSIFISLSNAPRAMVSNLLLKMVYVLVWITGKRGMQFLSFRDALQMEGRKM* 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3343 1082 Gene3D Tetratricopeptide repeat domain 728 893 IPR011990 GO:0005515
Mtr7g3343 1082 Gene3D Tetratricopeptide repeat domain 491 646 IPR011990 GO:0005515
Mtr7g3343 1082 Gene3D Tetratricopeptide repeat domain 647 727 IPR011990 GO:0005515
Mtr7g3343 1082 Pfam zinc-binding in reverse transcriptase 283 371 IPR026960 -
Mtr7g3343 1082 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 674 704 IPR002885 -
Mtr7g3343 1082 Pfam DYW family of nucleic acid deaminases 921 1006 IPR032867 GO:0008270
Mtr7g3343 1082 CDD RT_nLTR_like 1 213 - -
Mtr7g3343 1082 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 492 987 - -
Mtr7g3343 1082 SUPERFAMILY DNA/RNA polymerases 53 182 IPR043502 -
Mtr7g3343 1082 Pfam PPR repeat 579 607 IPR002885 -
Mtr7g3343 1082 Pfam PPR repeat 609 639 IPR002885 -
Mtr7g3343 1082 Pfam PPR repeat 779 803 IPR002885 -
Mtr7g3343 1082 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Mtr7g3343 1082 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 492 987 - -
Mtr7g3343 1082 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 2 141 IPR000477 -
Mtr7g3343 1082 Pfam E motif 823 885 IPR046848 -
Mtr7g3343 1082 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 1 213 IPR000477 -
Mtr7g3343 1082 TIGRFAM PPR: pentatricopeptide repeat domain 707 739 IPR002885 -
Mtr7g3343 1082 TIGRFAM PPR: pentatricopeptide repeat domain 579 607 IPR002885 -
Mtr7g3343 1082 TIGRFAM PPR: pentatricopeptide repeat domain 609 642 IPR002885 -
Mtr7g3343 1082 TIGRFAM PPR: pentatricopeptide repeat domain 679 706 IPR002885 -
Mtr7g3343 1082 Pfam PPR repeat family 704 752 IPR002885 -
Mtr7g3343 1082 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 705 739 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3343 Mtr-Chr7 50578905 50584770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3343 491 851 Glycoside Hydrolase AT3G49170 23.978 3.03e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3343 - - mtr:MTR_7g106930 1052.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3343 7 50578905 50584770 Mtr7g3343 7 50578905 50584770 ECH