Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3339 ATGGATTCGGGTTCGTGGAGTTCTTCTTCAAAGACCAAAATCAGAACGCCTTTCCCAGAACGCTTTCTCCACCGAAATAATTCTTCTCAGGATAACTTGGATAGGTTCATACCAAACCGATCAGCGATGGATTTTGATTACGCTCACTACATGATGATGGAGGGTTGTAGAAAAGGAAAAGAGAATCCAGCGTTGATGTCACCATCTCGTTCAGCCTACCAGAAGCGACTCGCTGAAGCATGCAACATGCATGACAGAACCAGAATCTTGGCCTTCAAGAACAAGCCTCCAACACCAGTCGAGCTCTTCCCTAAGGAACTTCTGTCCCCTCCACCTCTATCCAAATCCGCTAAGCCTAAACGATGCATTCCTCAGACTTCTGAGAGGACCTTGGACGCACCTGATATCTTAGATGACTTTTACTTGAATTTGCTAGACTGGGGTAGCAGCAATGTTGTCAGTATTGCCCTTGAAAATACCGTTTATCTTTGGAATGCTTCAGATTCCTCCACTTCAGAGCTTGTCACTGTAGATGATGATGATGGTCCTGTCACAAGCGTTAGCTGGGCCCCCGATGGTCGCCATTTAGCCATTGGGTTGAACAACTCCCATGTCCAGCTCTGGGATACCACTGCTTGTAAACAGCTAAGGGCAATGAAGGGTGGACACAGAGCAAGAGTGGGTTCATTGGCTTGGAACAACCATATTCTGACAACAGGAGGAATGGATGGTAAAGTTGTAAACAATGATGTTAGAGTGAGATCTCACATCGTTGAAACATACATGGGACACAACCAGGAGGTTTGTGGGCTCAAGTGGTCACCCTCAGGACAACAATTGGCAAGTGGTGGAAACGATAATGTTGTTCACATATGGGATAGATCCGTGGTTTCTTCAAATTCACCTACCCGATGGCTTCACAGGTTTGAGGAACACATAGCTGCTGTGAAGGCACTGGCTTGGTGTCCCTTTCAGGGTAATCTACTGGCTTCTGGTGGAGGTGGAGGTGATCATTGCATTAAGCTGTGGAACACACACACTGGTGCGAGATTGAATTCTGTTGACACTGGATCGCAAGTATGTGCTCTGCTATGGAACCAGAACGAGCGTGAGCTACTTAGCTCACATGGTTTCACCGAGAACCAGCTTACCCTTTGGAAGTATCCTTCTATGGTGAAAATGGCAGATCTCAATGGTCACACTTCGAGGGTGCTGTATATGGCGCAGAGTCCAGATGGGTGTACAGTGGCATCTGCGGCTGCAGATGAAACTCTTAGATTTTGGAATGTCTTTGGGAGCCCAGCAGAAGCATGCAAAGCCGCAGCGCCAAAGACATATAATGAGCCCTTTGCTAATTTCACCCGTATTCGTTGA 1374 0.4709 MDSGSWSSSSKTKIRTPFPERFLHRNNSSQDNLDRFIPNRSAMDFDYAHYMMMEGCRKGKENPALMSPSRSAYQKRLAEACNMHDRTRILAFKNKPPTPVELFPKELLSPPPLSKSAKPKRCIPQTSERTLDAPDILDDFYLNLLDWGSSNVVSIALENTVYLWNASDSSTSELVTVDDDDGPVTSVSWAPDGRHLAIGLNNSHVQLWDTTACKQLRAMKGGHRARVGSLAWNNHILTTGGMDGKVVNNDVRVRSHIVETYMGHNQEVCGLKWSPSGQQLASGGNDNVVHIWDRSVVSSNSPTRWLHRFEEHIAAVKALAWCPFQGNLLASGGGGGDHCIKLWNTHTGARLNSVDTGSQVCALLWNQNERELLSSHGFTENQLTLWKYPSMVKMADLNGHTSRVLYMAQSPDGCTVASAAADETLRFWNVFGSPAEACKAAAPKTYNEPFANFTRIR* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3339 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 397 430 - -
Mtr7g3339 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 218 IPR001680 GO:0005515
Mtr7g3339 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 209 - -
Mtr7g3339 457 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 23 457 IPR033010 GO:0010997|GO:0097027|GO:1904668
Mtr7g3339 457 MobiDBLite consensus disorder prediction 1 15 - -
Mtr7g3339 457 SMART WD40_4 170 209 IPR001680 GO:0005515
Mtr7g3339 457 SMART WD40_4 302 344 IPR001680 GO:0005515
Mtr7g3339 457 SMART WD40_4 254 293 IPR001680 GO:0005515
Mtr7g3339 457 SMART WD40_4 212 250 IPR001680 GO:0005515
Mtr7g3339 457 SMART WD40_4 390 429 IPR001680 GO:0005515
Mtr7g3339 457 Pfam WD domain, G-beta repeat 396 429 IPR001680 GO:0005515
Mtr7g3339 457 Pfam WD domain, G-beta repeat 259 293 IPR001680 GO:0005515
Mtr7g3339 457 Pfam WD domain, G-beta repeat 306 344 IPR001680 GO:0005515
Mtr7g3339 457 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 23 457 - -
Mtr7g3339 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 293 - -
Mtr7g3339 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 293 IPR001680 GO:0005515
Mtr7g3339 457 ProSitePatterns Trp-Asp (WD) repeats signature. 416 430 IPR019775 -
Mtr7g3339 457 Gene3D - 86 432 IPR015943 GO:0005515
Mtr7g3339 457 MobiDBLite consensus disorder prediction 1 26 - -
Mtr7g3339 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 430 IPR001680 GO:0005515
Mtr7g3339 457 SUPERFAMILY WD40 repeat-like 138 430 IPR036322 GO:0005515
Mtr7g3339 457 Pfam Anaphase-promoting complex subunit 4 WD40 domain 176 234 IPR024977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3339 Mtr-Chr7 50537487 50540280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3339 184 373 Miscellaneous Gene Families AT5G08390 27.979 4.01e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3339 K03363 - gmx:100801495 706.442