Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3169 ATGGAGGCACTCCTCCAATTCCAACTCCAACTCAATTCAACTCTCTCCTTCTCTTCTTTCCTTCACCCCCACAACCACCGTCACCACTTCAACTTCAAACCAAATAAACCTCACTCAAAAACCTGTTATCATCCCCTTCACTCTCCCACAGTTCCAATTTCCACTCCACACACCCCTCCCTCTTTCCCACACCCCTCCTTTCTCTTCCCTTTCCTCCGCTTCTCTTCTCACAACAAAAACCCCAACCTCGCCAAATCCATCCACGCTACCCTTCTCAAAAACCATGAAATACATCATCTCACCACCGCTCTCATTTCAACTTACATCAACCTCCGTCTCTTCTCCTACGCCCACCGTCTCTTCCTCTCTCAATCTCCCCCCAACATCGTTTCTTACTCCGCACTTATCTCCGCTTTCTCCAAATCAAACCGTGAAAAACAATCCCTTTTCCTCTTCCTTCACATGATAACAGTTTCATCTCTTCGCCCAAACCACTACACTTACGTCGCCGTTTTAACCGCTTGCACCCGAATCCTCAACCTCCAATTTGGTCTTCAGTTACACGCTGCTGTTATCAAAACTGGATATTTGAAATCCGTTTTTGTATCCAATGCGCTTATGTTATTTTATTCTAAATGTGGGTTTTATAAAAATGCTTTCAAAGTGTTTGATGAAATGCCTGAAAGAGATATTGCGTCGTGGAACACTGTAATGTCTTGTGCAGTTCAGGAGTTTATGTATGATGATGTGTTTCGATTGTTTTGTGATATGCTGGTGATTGATGGTTTGAAAGTTGATTATTTTACTCTGTCAACGTTTTTGACGGCGTGTGCTGCAAGTGGGTTGTTGATGGAAGGGAAGCAAGTGCATGCGCATGCTGTTAAGGTTGGTTTGGAGGATGAATTGAATGTTGGGAATGCCCTTATTGGATTTTATACAAATTTCGGAGATATTGATGACGTGGTTTGTTTGTTTGAGAGGATGAGTGTGAGAGATGTTATAACTTGGACAGAGATGGTGAGGGTGTATATGGAATTTGGTTTTGTTGATTTGGGTTTGAAGATATTTGATGAGATGCCGGAGAAAAATTGTGTGACTTATAATGTTCTTTTGTCTGGGTTGTGTCGAAATGCGGAGGGTTTAAAGGCTGTGGAATTGTTTATAAGAATGGTGGAGGAGGGTGTAGAGTTAACGGATTTCTCTTTGAGTAGTGGGATTAATGCATGTAGTTTGCTTGCTGATTATAGGGTCAGCAGGCAAATGCATGGATTTGCAATCAAGTTTGGGTTTGGATCAAATGTTTTTGTTGAAGGGGCTTTGCTTGACATGTACACAAGGTGTGGGAGGATGGTAGATGCTGAAAAGATGTGGGAAGAATTGGAGGAGGTTAGCAGTGTGGTTTGGACTTCCATGATGTGTGGCTATGCTAGAAACGGGCAACCGCGTGAGGCGTTTTCTCTTTTCCATCTTGGTCATTCTGAATGGAAATTGATTATGGATGAAGTTGCATTAACTTCAATGCTTAGTCTTTGTGGAACCGTCGGCTATCATGATATGGGTAAGCAAATCCATTGTCAAGTTCTTAAATTTGGCTTTCATTCTAATGTGCAAGTTGGAAATGTTGTGGTTGAAATGTATTTTAAATGTGGGAATGTCGATGATGCAATTAAGATGTTCAGTGGCATGGCCTCTACCGATATAGTTTCATGGAATACTTTGATTTCTGGATATCTTACACACAGACAGGGCGATAGAGCATTAGAAATATGGTTGAAAATGCAGGAAGAGGGCATAAAGCCGGATGATATTACATTTGTTTTGATAATTTCAGCCTACAGACAGACTAGCTTGAATTTGGTTGATGACTGCCGTATCTTGTTTAATTCAATGAAAACTGTTTATCACATCGAGCCAACATCTCAGCATTATTCATCTTTCATCAGTGTTTTGGGTCACTGGGGTCTTTTGGAAGAGGCACTGGAAACTATCAATAAGATGTCTTTTAAGCCTTCTGCTTTTGTTTGGCGTGCTTTGCTTGATGGTTGCAGACTCCATAAGAATACAATGATTGGAAAATTGGCTGCCAAAAATATTCTTGCCCTCGAACCTAATGATCCGTCTACTTATATACTTGTTTCAAATTTGCATTCGTCTTCTGGGAGATGGGATTGCTCTGAGAGGACTAGGGAAAATATGAGAGAAAAGGGATTTCGCAAACACCCGGCTCAAAGTTGGATAATTTGTCGGAAGAAAATGCATTCATTCTATGCAAGAGATAGGTCTCATCAGCAAGATAAAGACATATATAGGGGTTTGGAGATTCTAATATTAGAGTGCCTAAAAGTTGGATATGAACCTGAAACAAGCTTTGTTCTCCACGAAGTGGAGGAGCATCAAAAGAAAAAATTTCTATTCAATCACAGTTCAAAACTAGCAGCAGCTTATGGATTATTGATGACAAAGCCAGGGAAGCCCATTCGGATTGTAAAGAACATCCTTCTTTGTGGGGACTGCCATACATTCTTGAAATGTGCATCTTTTGTCACTAAGAGGGATATTTTTCTAAGAGATTCTTCAGGATTTCACTGTTTCTCTGATGGCCAATGCTCATGTAAAGACCAATGGTGA 2628 0.4091 MEALLQFQLQLNSTLSFSSFLHPHNHRHHFNFKPNKPHSKTCYHPLHSPTVPISTPHTPPSFPHPSFLFPFLRFSSHNKNPNLAKSIHATLLKNHEIHHLTTALISTYINLRLFSYAHRLFLSQSPPNIVSYSALISAFSKSNREKQSLFLFLHMITVSSLRPNHYTYVAVLTACTRILNLQFGLQLHAAVIKTGYLKSVFVSNALMLFYSKCGFYKNAFKVFDEMPERDIASWNTVMSCAVQEFMYDDVFRLFCDMLVIDGLKVDYFTLSTFLTACAASGLLMEGKQVHAHAVKVGLEDELNVGNALIGFYTNFGDIDDVVCLFERMSVRDVITWTEMVRVYMEFGFVDLGLKIFDEMPEKNCVTYNVLLSGLCRNAEGLKAVELFIRMVEEGVELTDFSLSSGINACSLLADYRVSRQMHGFAIKFGFGSNVFVEGALLDMYTRCGRMVDAEKMWEELEEVSSVVWTSMMCGYARNGQPREAFSLFHLGHSEWKLIMDEVALTSMLSLCGTVGYHDMGKQIHCQVLKFGFHSNVQVGNVVVEMYFKCGNVDDAIKMFSGMASTDIVSWNTLISGYLTHRQGDRALEIWLKMQEEGIKPDDITFVLIISAYRQTSLNLVDDCRILFNSMKTVYHIEPTSQHYSSFISVLGHWGLLEEALETINKMSFKPSAFVWRALLDGCRLHKNTMIGKLAAKNILALEPNDPSTYILVSNLHSSSGRWDCSERTRENMREKGFRKHPAQSWIICRKKMHSFYARDRSHQQDKDIYRGLEILILECLKVGYEPETSFVLHEVEEHQKKKFLFNHSSKLAAAYGLLMTKPGKPIRIVKNILLCGDCHTFLKCASFVTKRDIFLRDSSGFHCFSDGQCSCKDQW* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3169 875 Gene3D Tetratricopeptide repeat domain 492 616 IPR011990 GO:0005515
Mtr7g3169 875 Gene3D Tetratricopeptide repeat domain 72 179 IPR011990 GO:0005515
Mtr7g3169 875 Gene3D Tetratricopeptide repeat domain 617 766 IPR011990 GO:0005515
Mtr7g3169 875 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 362 IPR002885 -
Mtr7g3169 875 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Mtr7g3169 875 Pfam DYW family of nucleic acid deaminases 783 875 IPR032867 GO:0008270
Mtr7g3169 875 PANTHER OS07G0172600 PROTEIN 32 409 - -
Mtr7g3169 875 PANTHER OS07G0172600 PROTEIN 478 861 - -
Mtr7g3169 875 PANTHER OS07G0172600 PROTEIN 400 476 - -
Mtr7g3169 875 TIGRFAM PPR: pentatricopeptide repeat domain 466 489 IPR002885 -
Mtr7g3169 875 TIGRFAM PPR: pentatricopeptide repeat domain 568 601 IPR002885 -
Mtr7g3169 875 TIGRFAM PPR: pentatricopeptide repeat domain 233 259 IPR002885 -
Mtr7g3169 875 TIGRFAM PPR: pentatricopeptide repeat domain 365 398 IPR002885 -
Mtr7g3169 875 Gene3D Tetratricopeptide repeat domain 180 291 IPR011990 GO:0005515
Mtr7g3169 875 Gene3D Tetratricopeptide repeat domain 292 422 IPR011990 GO:0005515
Mtr7g3169 875 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 566 600 IPR002885 -
Mtr7g3169 875 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 478 861 - -
Mtr7g3169 875 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 32 409 - -
Mtr7g3169 875 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 400 476 - -
Mtr7g3169 875 Pfam PPR repeat 233 258 IPR002885 -
Mtr7g3169 875 Pfam PPR repeat 204 231 IPR002885 -
Mtr7g3169 875 Pfam PPR repeat 540 562 IPR002885 -
Mtr7g3169 875 Pfam PPR repeat 643 666 IPR002885 -
Mtr7g3169 875 Pfam PPR repeat 306 331 IPR002885 -
Mtr7g3169 875 Pfam PPR repeat 130 156 IPR002885 -
Mtr7g3169 875 Pfam PPR repeat 439 462 IPR002885 -
Mtr7g3169 875 Pfam PPR repeat 466 489 IPR002885 -
Mtr7g3169 875 Pfam PPR repeat family 566 612 IPR002885 -
Mtr7g3169 875 Pfam PPR repeat family 362 409 IPR002885 -
Mtr7g3169 875 Pfam E motif 685 746 IPR046848 -
Mtr7g3169 875 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3169 Mtr-Chr7 48681907 48685665 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3169 63 875 Glycoside Hydrolase AT3G49170 34.420 2.03e-152 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3169 - - mtr:MTR_7g103230 1744.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3169 7 48681907 48685665 Mtr7g3169 7 48681907 48685665 ECH