Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3106 ATGTTTTCTCCGTCTACACCATTCCCTTCTAGAATTCTTCCTTCCCCTTCAGTTATGATGCCTCCTCATGACCAAGCTGCTCCTGCACTTTCTTCTTGGCCTACTACTTTTCCTACCTCCGTTCTTTTACAAGAGCATCGCGATGAGTATAAGCCGCTACTTCATACGTGTAATGAAGACAACAAACCACCCCAGGCAACCTTAAACACAAGGGTAACAGATATGACCTCTATTTGTGAGAAAATCATTACCGGCGATGGCGATGGCGATGGCCATGTTGATGTGTCCGTGCATAACTGTATGCATCAGTTGCATCTTCGGTGTCATTTACAGAACTTATTGGCTTCTTCACCTGAAGAGGATTTTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAACTATGCTGCCTGCTGATGGTTTCCAATGGGATGCACTTACTCTTGCTAAGCAAGCTCTATCAGCCTCAAAACAAGCCGCTGCAGTTGCTCAAGAGTTGAAATTGGTTAAAATTGACGATGATGATTCACTACCTCTTGGACTGGCCGACTCTTCACTTGGAAAGAACAAAATCGTGAGGTCAATACGGCTTAAAGAAAGACGATCTAAACAGAGAAAAGTGTCTAACTCAAAAGTTCTCGATGACGAAATGTACCTTACTAAAAAGTCCAATGTACAAAGAAGGTTACGTTTAGAGAAAAAGTTGAAAGAAGGACTTGACGGAAACCATGCTCTGCGCTTGTTCTTATGGAGTCCTGAAACAAAGCAACTTTTGAGCATTGAAGAAGAATCTCAATTGATTGCTCAAATACAGGATTTATTTAAATTGAAAGAAACAAAGATCAAACTTCAGTCTCATTTTGGAAGGGAACCAACTTTGGCTGAATGGGCAGATGGTGTGGGCCTTAGCTGTCGTGACCTTCAGAAACGACTTCATTGTGGTAACAGAAGCAAAGATAAACTGATTCATGCCAACTTACGCCTGGTAGTTCACATTGCTAAATATTACCAGGGGCGTGGTCTCAGCCTTCAGGACTTATTGCAGGAGGGAAGTATGGGCCTTATGAGGAGTGTCGAAAAGTTCAAACCCCAAGCTGGTTGCCGGTTCAGTACTTATGCTTACTGGTGGATAAGGCAAACAATAAGGAGGGCCTTATTTCTGCATTCCAAAACAATTCGTCTGCCGGAGAATTTCTACGCCCTTTTGGGCAAGATTGCGGAAGCAAAGAAATCATACATTAAAGAAGGAAATCTTCACCCCACCAAAGAAGAAATAGCAAAGCGAGTAGGAATTACAGTAGATAGGTTGGAAATGTTGCTATTTTCTACAAGAACTCCACTTTCGATGGAGCGAGCTGTATGGGCAGACTCGGACACAACTTTCCAGGAGATTACTGCAGACTCATCAATTGAGATCCCAAATGTATGTGTTGCAAAACAACTAATGAGGAGCCATGTACGCAACCTCCTAGGTATTTTGCCTCCAAAAGAAAGGAAGGTACTCAGGCTAAGATTTGGTATTGAAGATGGTTATGAGAAATCTTTGACAGAAATTGGCAAGGTGTTGGGTGTGTGTAAGGAGAGGGTCAGACAATTGGAGAGCCAAGCGTTGAACAAGCTCAAGCAGTGCCTTGTTAGTCAACAACTTGATGCATATGTAGACTTAATAGTATAG 1674 0.4235 MFSPSTPFPSRILPSPSVMMPPHDQAAPALSSWPTTFPTSVLLQEHRDEYKPLLHTCNEDNKPPQATLNTRVTDMTSICEKIITGDGDGDGHVDVSVHNCMHQLHLRCHLQNLLASSPEEDFVSSSSSSSSSSTMLPADGFQWDALTLAKQALSASKQAAAVAQELKLVKIDDDDSLPLGLADSSLGKNKIVRSIRLKERRSKQRKVSNSKVLDDEMYLTKKSNVQRRLRLEKKLKEGLDGNHALRLFLWSPETKQLLSIEEESQLIAQIQDLFKLKETKIKLQSHFGREPTLAEWADGVGLSCRDLQKRLHCGNRSKDKLIHANLRLVVHIAKYYQGRGLSLQDLLQEGSMGLMRSVEKFKPQAGCRFSTYAYWWIRQTIRRALFLHSKTIRLPENFYALLGKIAEAKKSYIKEGNLHPTKEEIAKRVGITVDRLEMLLFSTRTPLSMERAVWADSDTTFQEITADSSIEIPNVCVAKQLMRSHVRNLLGILPPKERKVLRLRFGIEDGYEKSLTEIGKVLGVCKERVRQLESQALNKLKQCLVSQQLDAYVDLIV* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3106 557 Gene3D - 476 556 IPR036388 -
Mtr7g3106 557 Gene3D - 394 471 IPR036388 -
Mtr7g3106 557 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 394 467 IPR013324 -
Mtr7g3106 557 PIRSF Sigma_factor_SigC 1 557 IPR016262 -
Mtr7g3106 557 Pfam Sigma-70 region 2 321 385 IPR007627 GO:0003700|GO:0006352|GO:0006355
Mtr7g3106 557 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 454 553 IPR013324 -
Mtr7g3106 557 Pfam Sigma-70 region 3 402 473 IPR007624 GO:0003700|GO:0006352|GO:0006355
Mtr7g3106 557 ProSitePatterns Sigma-70 factors family signature 1. 345 358 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mtr7g3106 557 MobiDBLite consensus disorder prediction 1 23 - -
Mtr7g3106 557 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 14 557 - -
Mtr7g3106 557 PRINTS Major sigma-70 factor signature 345 358 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mtr7g3106 557 PRINTS Major sigma-70 factor signature 369 377 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mtr7g3106 557 PRINTS Major sigma-70 factor signature 493 505 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mtr7g3106 557 PRINTS Major sigma-70 factor signature 514 529 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mtr7g3106 557 PRINTS Major sigma-70 factor signature 529 540 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mtr7g3106 557 Gene3D - 150 390 - -
Mtr7g3106 557 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 14 557 - -
Mtr7g3106 557 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 319 544 IPR014284 GO:0003700|GO:0006352|GO:0006355
Mtr7g3106 557 CDD Sigma70_r4 483 541 - -
Mtr7g3106 557 Pfam Sigma-70, region 4 490 542 IPR007630 GO:0003700|GO:0006352|GO:0006355
Mtr7g3106 557 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 242 390 IPR013325 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3106 Mtr-Chr7 48011400 48016083 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3106 - - gmx:100815699 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3106 7 48011400 48016083 Mtr7g3106 7 48011400 48016083 ECH
Mtr1g2176 1 31944347 31951387 Mtr7g3106 7 48011400 48016083 PCT