Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3053 ATGAGAGATTTTGTGATCCTCGGTTCATCCATCATCACTCCACGTTCATCCTCATCCTCATCTTCCACTCCACAACACCGCCACACCATAATCAAATCCCACAAATCCTCTCTTCCAAACCTCTCTCCACGGAACAATTCTACTTCCCTTCTTCAAACCCCTCTCATTCTCAAAGAATTTGAAACTGTCCTACACGGCGAGCTTGATTCCGATGTGGATGTTGAGCTCTTGGCCAATGCGGTTCTCATTGGCATCCAAGACAGAAATGTTCGGACTGTGATTGACAGTTTGAATAAAGTTGAGGGACTTTCTGAGATTTCACTTTCTACTCATCTTGATGCCTCTGCCATTGCTAATGAGTGTTGTCATATGGTTACTTGTGGTCATATTGAAGAAGCTGTTGAATTGATGGAGGTTCTCTCACGTTTCCAGTTATCAATTGCAAAACTTGTTCAGCCATCTGACATTATAAAAAGATGTATTCTTAGTCGTAAGCCAACTTTAGCTGTGAGGTATGCGTCACTTCTTCCACAAGCACCTGTATTATTTTGTAGCATCATATCTGAATTTAGCAAAAGGAGGGATTTGGTTTCTGCTCTAAAAGCTTACGATGCATTGAAAAAGAACTTGAAAGGTCCCAATATGTACATATACCGGGCAATAATTGACGCTTGTGGTCTCTGTGGCGATTTCATGAAATCTAGGTACATATATGAGGATTTGCTTAATCAGAAAATCACTCCAAATATATATGTGTTCAACAGTCTCATGAATGTGAATGCCCATGATCTCAGCTACTCGTTAAATCTATATCAGAATATGCAGAAGCTAGGCCTGAAACCCGATATGGCATCCTATAACATCCTACTGAAAGCTTGCTGTGTTGCTGGAAGAGTTGACGTGGCTCAAGACATGTATAGGGATCTTAAGCATTTGGAATCAGTGGGACAGCTGAAATTAGATGTTTTCACCTACAGCACAATTATAAAGGTCTTTGCAGATGCAAAATTGTGGCAAATGGCTCTAAAAATCAAGCGCGACATGCTGTCTGCTGGCGTTTCTCTTAATACTATTGCGTGGTCATCATTAATCAATGCCTGTGCACATGCAGGGCTTGTTGAGCAGGCAATTCAGTTATTTGAAGAAATGCTTTTGGCTGGCTGTGAACCAAATACACAGTGTTTCAACATAATTTTACATGCATGTGTTGAAGGTTGCCAGTATGACAGGGCTTTTCGCCTTTTCCACTCATGGAAGGGAAGTAAGATGTTAGTGCCCTTAGATGAAAGCTGCAATAGCAATTCAGAGCAGGGAGGCATGCATAATGTTACCACAGTGCCAACCGGCATTTCTAGTTCACATATCTTGAGCTTTACTGAGAGGTTCCCTTTCACACCCACTACAACAACATACAATATTTTACTGAAGGCCTGTGGTACTAATTACTATCATGCAAAAGCGTTAATCAACGAGATGAGAACAGTGGGTCTTTCCCCGAATCAAATAAGCTGGTCAATTTTGATAAATATATGCGGCGCATCAGAAAATGTGGATGGTGTCATTGAGATTTTGAGAACCATGGTTGATGCTGGAATTAAACCGGATGTTATTTCATATACAACAGCCATTAAGGTTTGTGTCGAAAGTAAGAATTTTACGCAGGCATTAACCTTATATAGAGAAATGAAAAGCTATGGGACGCATCCAAATTTGGTGACATATAATACACTTCTAAGGGCACGCAGTAAATACGGATCCTTACGTGAAGTGCAACAGGGCCTAGCTATATATCAAGATATGCGAAAGGCGGGGTACAAATCAAATGACTACTATCTTGAGGAGCTGATTGAGGAGTGGTGTGAAGGAGTAATACAAGACAACGAAGAGTACGAAGGAGAAGAATTTTCTTCCAGCAAGAAATCTGAAATAGAGAGACCTCAAAGTTTACTTCTTGAAAAAATTGCGTCACACCTGTTAAAGAGGGTAGCTGACATCCTGGCAATTGATGTTCAAGGGCTCACAAAGGTTGAAGCCCGCCTGGTGATTCTCGCTGTTCTTCGAATGATCAAAGAGAACTACGCTATTGGGCATTCAGTGAAGGATGACATCTTGATCATCATAGGAGCTACCAAAGCAGATGAAAATCCATCCAAAGAGATATTAGTTGTGCAAGAGGCTATGGTAAAACTTCTTACGAATGAACTGGGGCTCGAGGCTCTTCCAGCCACAACCAGATTCGCACCTAGTCACACACCAAAGTTACAAAACCCCGAATTTTCTAATCTCACCATAGAAGCACTCCCAGGAGAGAATGCATTACCCACATCAATGGGGTTTCACACAAGGAGACCTGCAGTTCTACAAAGATTGAAGGTCACCAAAAAATCATTACACCGTTGGTTGCAGAGGAAGTCAAACGTAAAATAG 2427 0.4137 MRDFVILGSSIITPRSSSSSSSTPQHRHTIIKSHKSSLPNLSPRNNSTSLLQTPLILKEFETVLHGELDSDVDVELLANAVLIGIQDRNVRTVIDSLNKVEGLSEISLSTHLDASAIANECCHMVTCGHIEEAVELMEVLSRFQLSIAKLVQPSDIIKRCILSRKPTLAVRYASLLPQAPVLFCSIISEFSKRRDLVSALKAYDALKKNLKGPNMYIYRAIIDACGLCGDFMKSRYIYEDLLNQKITPNIYVFNSLMNVNAHDLSYSLNLYQNMQKLGLKPDMASYNILLKACCVAGRVDVAQDMYRDLKHLESVGQLKLDVFTYSTIIKVFADAKLWQMALKIKRDMLSAGVSLNTIAWSSLINACAHAGLVEQAIQLFEEMLLAGCEPNTQCFNIILHACVEGCQYDRAFRLFHSWKGSKMLVPLDESCNSNSEQGGMHNVTTVPTGISSSHILSFTERFPFTPTTTTYNILLKACGTNYYHAKALINEMRTVGLSPNQISWSILINICGASENVDGVIEILRTMVDAGIKPDVISYTTAIKVCVESKNFTQALTLYREMKSYGTHPNLVTYNTLLRARSKYGSLREVQQGLAIYQDMRKAGYKSNDYYLEELIEEWCEGVIQDNEEYEGEEFSSSKKSEIERPQSLLLEKIASHLLKRVADILAIDVQGLTKVEARLVILAVLRMIKENYAIGHSVKDDILIIIGATKADENPSKEILVVQEAMVKLLTNELGLEALPATTRFAPSHTPKLQNPEFSNLTIEALPGENALPTSMGFHTRRPAVLQRLKVTKKSLHRWLQRKSNVK* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3053 808 Pfam PPR repeat family 356 402 IPR002885 -
Mtr7g3053 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 570 607 IPR002885 -
Mtr7g3053 808 Pfam PPR repeat 323 353 IPR002885 -
Mtr7g3053 808 Gene3D Tetratricopeptide repeat domain 313 446 IPR011990 GO:0005515
Mtr7g3053 808 Gene3D Tetratricopeptide repeat domain 181 312 IPR011990 GO:0005515
Mtr7g3053 808 Gene3D Tetratricopeptide repeat domain 453 652 IPR011990 GO:0005515
Mtr7g3053 808 MobiDBLite consensus disorder prediction 10 27 - -
Mtr7g3053 808 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 65 798 - -
Mtr7g3053 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Mtr7g3053 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 535 569 IPR002885 -
Mtr7g3053 808 Pfam Pentatricopeptide repeat domain 523 580 IPR002885 -
Mtr7g3053 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Mtr7g3053 808 Pfam Pentacotripeptide-repeat region of PRORP 187 305 IPR033443 -
Mtr7g3053 808 PANTHER OS03G0284900 PROTEIN 65 798 - -
Mtr7g3053 808 MobiDBLite consensus disorder prediction 1 46 - -
Mtr7g3053 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 500 534 IPR002885 -
Mtr7g3053 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 312 IPR002885 -
Mtr7g3053 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Mtr7g3053 808 TIGRFAM PPR: pentatricopeptide repeat domain 502 536 IPR002885 -
Mtr7g3053 808 TIGRFAM PPR: pentatricopeptide repeat domain 216 250 IPR002885 -
Mtr7g3053 808 TIGRFAM PPR: pentatricopeptide repeat domain 359 392 IPR002885 -
Mtr7g3053 808 TIGRFAM PPR: pentatricopeptide repeat domain 285 310 IPR002885 -
Mtr7g3053 808 TIGRFAM PPR: pentatricopeptide repeat domain 323 356 IPR002885 -
Mtr7g3053 808 TIGRFAM PPR: pentatricopeptide repeat domain 537 570 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3053 Mtr-Chr7 47326393 47333731 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3053 183 650 Glycosyltransferase AT1G05670 21.237 2.48e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3053 - - gmx:100794606 1171.76