Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2944 ATGGCTTCGTATCAGGGTTCAGTTAGTGCTGCCCAGGTTGGTTCTTACTTTGTGGGACAGTACTATCAGGTTCTTCGTCAACAACCTGATCATGTTCATCAGTTTTACTCTGATTTGAGTTCCATGATTCGTGTTGACGGTGATTATACCGAGACTGCATCTGATGTCTTGCATATTCACAATATTGTGACATCGTTGAATTTTTCGACAATTGAGATCAGGACGATCAATTCTCTGGACTCTTGGGATGGAGGAGTGATTGTAATGGTTACAGGTGTTGTTAAGAACAAAGATATCAATAGGAAGCAGAAGTTTGTTCAAACCTTTTTCCTTGCTCCTCAGGAGAAGGGTTATTTTGTACTCAATGATATTTTTCAGTTTGTTGATGAAGATGTAGTGCATCCGAATCTGGTACCGGTGGCATCTGACAGAATTGACTCACAGCCACATGTTTCTGCTTCTTTTGCTGAACCACCAGCTTCAGACTATGGTTTTGAGGAAGAAGCTAGAGACTATGTCAACTCAGTTCATATAGATGATGATCCAGTGGACAAGTATAGTCTTCCTGAGCAGCAGCAGCAGCAACTACAAGAAGATTTCGAGACCGAAGTTGTGGTGGATGAAACTCCTGTACAGGAGGCATCTCCACCAGTGCATAATGTTGCACATACTATCCGTGAAACCCCTGCTGCTCCTGTGGAAGAGTCTTTTGAGGAACCTGCTAAGAAAACTTATGCATCTATTTTACGCGCCAAAGGCCAATCCGCGTTGTCTGCTGCTCCACAACATGCTCCTCCTCCTTCAGAGTACAATCATGTCACACAGCCTGCTGTTCAGCAGTCAGTGGCGCAGCCTGCTTTCCAGCAGTCAAGCTCAGCATCTGCATATGTTTCAGAGTCTGGGCCTGAGGCAGCCGAGGAAGGCTACCGATTTGAAGAAGAAGAAGTAACATCTGTCTATGTGAGAAACTTGCCTGCTGATATTACCGAAGCTGAGATTGACCAGGAATTTAAGAATTTCGGCAGAATTAAGCCGGATGGAATATTCATAAGGGTTCGACAGGAAATTGGAGTTTGCTATGCATTTGTGGAATTCGAAGATGTTGTTGGCACACAAAATGCGCTTCAGGCTTCTCCCATTCAACTTGCTGGGCGACCAATATACATAGAGGAGCGAAGACCAAGCACTAGCAGTGCAACTCGAGGAGGAAGAGGAAGGGGAAGAGGCAGAGGCAGTTATCCAACAGATGCTCCTAGAGGGCGTTTTGGTGGTCGTAGCTCGGGAAGGGGATATTACCAGGATACTTCAGACTACTCCAGACCAAGAGGTGATGGTTATCTTCAGCGTGGTTCACGATAG 1359 0.454 MASYQGSVSAAQVGSYFVGQYYQVLRQQPDHVHQFYSDLSSMIRVDGDYTETASDVLHIHNIVTSLNFSTIEIRTINSLDSWDGGVIVMVTGVVKNKDINRKQKFVQTFFLAPQEKGYFVLNDIFQFVDEDVVHPNLVPVASDRIDSQPHVSASFAEPPASDYGFEEEARDYVNSVHIDDDPVDKYSLPEQQQQQLQEDFETEVVVDETPVQEASPPVHNVAHTIRETPAAPVEESFEEPAKKTYASILRAKGQSALSAAPQHAPPPSEYNHVTQPAVQQSVAQPAFQQSSSASAYVSESGPEAAEEGYRFEEEEVTSVYVRNLPADITEAEIDQEFKNFGRIKPDGIFIRVRQEIGVCYAFVEFEDVVGTQNALQASPIQLAGRPIYIEERRPSTSSATRGGRGRGRGRGSYPTDAPRGRFGGRSSGRGYYQDTSDYSRPRGDGYLQRGSR* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2944 452 Gene3D - 3 132 - -
Mtr7g2944 452 SUPERFAMILY RNA-binding domain, RBD 313 424 IPR035979 GO:0003676
Mtr7g2944 452 CDD NTF2 9 129 IPR018222 -
Mtr7g2944 452 SUPERFAMILY NTF2-like 9 130 IPR032710 -
Mtr7g2944 452 MobiDBLite consensus disorder prediction 254 273 - -
Mtr7g2944 452 CDD RRM_SF 319 390 - -
Mtr7g2944 452 MobiDBLite consensus disorder prediction 389 452 - -
Mtr7g2944 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 386 IPR000504 GO:0003723
Mtr7g2944 452 MobiDBLite consensus disorder prediction 289 309 - -
Mtr7g2944 452 Pfam Nuclear transport factor 2 (NTF2) domain 13 127 IPR002075 -
Mtr7g2944 452 Gene3D - 288 446 IPR012677 -
Mtr7g2944 452 PANTHER GB|AAD20086.1 5 446 - -
Mtr7g2944 452 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 5 446 IPR039539 -
Mtr7g2944 452 SMART rrm1_1 318 390 IPR000504 GO:0003723
Mtr7g2944 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 394 IPR000504 GO:0003723
Mtr7g2944 452 ProSiteProfiles Nuclear transport factor 2 domain profile. 13 127 IPR018222 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2944 Mtr-Chr7 46246172 46250421 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2944 - - cam:101501784 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2944 7 46246172 46250421 Mtr7g2944 7 46246172 46250421 ECH