Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2879 ATGTCGAACCCTCAAAACGCGAAGCCATGGAAAGCAGAGTACGCAAAATCAGGTCGTTCGTCATGCAGAAGCTGCAAGAGTCCCATTGCAACCGAGAAGCTTCGTCTTGGCAAGATGGTTCAATCCTCCAAATTCGATGGCCTCATGCCCATGTGGAATCATGCTGAGTGCATATTGAAGAAAGCCAACCAGATAAAATTAGTTGATGATGTTGAGAACTTAGAGTCGCTTCGTTGGGAAGATCAGCAGAAGATTAGAAAGTACATTGAGAGCGGTGGTGGTGGTGGTAGTGGCACACCGAAGTCGAATGCTGCCTCTAAGTCGACTGCTGGAAAAAATATTGAATATGGTATTGAAGTTTCGCAAACATCACGCGCCACTTGCAAACATTGTGGTCAAAAAATTATCAAAGGAGAGATTCGCATATCTACTAAGCCTGATGGTCAAGGTGCCAGGGGTTTGGCTTGGCACCATGCTAAGTGTCTCTTGGAACTATCTCCATCAATTGAAGTGGATAATTTGCCTGGATGGAATAGTCTCTCATCATCTGATCAATCGGCTGTCAGTGAGTTGGCTACAAAAGACCATCCTACAAATAGAGGAGGTGGTAGTGGTACAAATGTCGAGGCTGAAGATGTTAAAGAATCCACACAACAATCCTCTTCCAAAGGTGGCACTAAACGGGGGAAAGATGCAGAGGGTGAGCAAAAGTCAAAGGCCGCTAAAGTCAAGGGAGATGTGTCTGCGAGCAGGGTAGCGGCAGTGAAAAATGCTGATGACTCCGGGGCGGCACGTGATCTTGAGAATAGACTGGAGGCCCAGAGCAAAGATCTCTGGGCTCTGAAGGATGATCTTAAAAAGCATGTGACAACAGCAGAGATGCGTGAAATGCTGGATGCCAATGGTCAAGATTCAACAGGATCAGAGCTTGATTTGCGTGACCGCTGTGCTGATGGAATGATGTTTGGAGGACTTAGTCCTTGCTCTCTATGTGATGGTTTTCTGCGTTATTCTGGAGGAATGTACCGGTGCACTGGATACATTTCCGAGTGGAGTAAATGTTCCTACTCTACCTGCGAACCAAAGCGTGCCCAAGGGAAGTGGAAAATCCCAAAGGAAACAGATAATCAGTACCTTAAAAAGTGGTTCAAATCTCAAAAAGGGAAGAAACCAACTAGGATATTGCCTCCGCCATCATCAAGGACTTCTGCTGAAAGTCAAATTTCTGCAGGCCAGCACCAACCATCAAACAGTGAAACTTTGGCTGATTTGAGAGTTGCCATCTCTGGGTTGCCTGAAGATTCCATTGTGGAATGGAAACGTAAAATTGATGCCGTAGGTGGAGTGCTTCATGCAAAAGTGAAGAAAGATACTAACTGCTTGGTGGTCAGTGGAGCGCTTAAGGATGAAGTTGAGATGCGGAAGGCAAGGAGGATGAAAATACCAATAGTCAGAGAGGACTATTTGGTAGACTGTATGGAAAGAAAGAAGAAGCTTCCATTTGATATGTACAAAGTTGAAATGATTGGTGAGGCTTCTAGCATGGTCACCATCAAAGTCAAGGGGCAAAGTGCTGTTCATGATGCTTCTGGCCTACAGGATTCTGGCCACATACTAGAGGAAGGGAAAAGCATATATAATACAACTTTGAATATGTCTGATTTGTCTACTGGTATTAACAGCTACTACATCCTGCAAATAATTGAAGAAGATAATGGGTCAGATTGCTACGTGTTTCGCAAATGGGGTCGAGTGGGAAATGACAAGATTGGAGGGAACAAACTGGAGGAAATGTCGAAATCTGATGCAATCAGGGAATTCAAACGACTATTCTTTGAGAAAACTGGAAACCCTTGGGAGGCCTGGGAACAAAAGACTATTCAGAAGCAACCTGGAAGATTCTTCCCCTTGGAAATTGATTATGGAGTTAACAAACAAGTTGTGAAAAAGAGTAAAAACAATGCTGACAGCAAATTACCCCCTCCATTAATAGAATTGATCAAGATGCTCTTTAATGTGGAAACATACAGATCCGCCATGATGGAATTTGAGATCAATATGTCCGAAATGCCACTCGGGAAACTGAGCAAAAGTAATATCCAAAAAGGTTTTGAAGCATTAACAGATATACAAAATCTTTTTAAAAGCAGCAATGCTGATCCATCAGTCAGGGATAGCTTGCTCATTGATGCTAGCAATAGGTTCTTCACTGTGATCCCTTCCATTCATCCACATATTATTAGGGATGAGGATGATTTTAAGTCAAAGGTGAAAATGTTGGAAGCCCTTCAAGATATTGAAATAGCCTCAAGATTAGTGGGATTTGACGCCAACAACGACGACTCCATTGATGATAATTATAAGAAGCTTCACTGTGATATATCTCCACTTCCTCATGACAGTGAAGATTTTAGATTAGTTGAGAAGTTTCTACATACTACTCATGCCCCCACACATACGGACTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGAGAAGGTGAATTTGATAAATATGCCCCTTACAGAGACAAAGTTGGCAACAGAATGCTCCTATGGCATGGTTCTAGGTTGACGAACTTTGTGGGCATTCTTAACCAAGGACTGAGAATTGCACCTCCCGAAGCCCCTGCAACTGGTTATATGTTTGGCAAAGGGATTTACTTTGCTGACCTTGTCAGCAAGAGTGCTCAGTATTGCTTCACTGATAAGAAAAATCCTGTTGGTCTAATGCTTTTGAGTGAAGTTGCCCTTGGAAATGTGTATGAGCTCAAAAAAGCTAAGTATATGGATAAACCTCCGCAAGGAAAGCATTCTACTAAAGGACTGGGCAAGAAAATGCCCCTGGAATCTGAATATGCAAAGTGGAGAGATGATGTCGTTGTTCCTTGTGGGAAACCGGTGTCATCAAATGTCAAGGCATCTGAGCTCATGTACAATGAGTATATTGTTTATAATACCGCTCAAGTTAAACTGCAATTCTTGTTGAAGGTGAGGTTCCATCACAAGAGATGA 3021 0.4283 MSNPQNAKPWKAEYAKSGRSSCRSCKSPIATEKLRLGKMVQSSKFDGLMPMWNHAECILKKANQIKLVDDVENLESLRWEDQQKIRKYIESGGGGGSGTPKSNAASKSTAGKNIEYGIEVSQTSRATCKHCGQKIIKGEIRISTKPDGQGARGLAWHHAKCLLELSPSIEVDNLPGWNSLSSSDQSAVSELATKDHPTNRGGGSGTNVEAEDVKESTQQSSSKGGTKRGKDAEGEQKSKAAKVKGDVSASRVAAVKNADDSGAARDLENRLEAQSKDLWALKDDLKKHVTTAEMREMLDANGQDSTGSELDLRDRCADGMMFGGLSPCSLCDGFLRYSGGMYRCTGYISEWSKCSYSTCEPKRAQGKWKIPKETDNQYLKKWFKSQKGKKPTRILPPPSSRTSAESQISAGQHQPSNSETLADLRVAISGLPEDSIVEWKRKIDAVGGVLHAKVKKDTNCLVVSGALKDEVEMRKARRMKIPIVREDYLVDCMERKKKLPFDMYKVEMIGEASSMVTIKVKGQSAVHDASGLQDSGHILEEGKSIYNTTLNMSDLSTGINSYYILQIIEEDNGSDCYVFRKWGRVGNDKIGGNKLEEMSKSDAIREFKRLFFEKTGNPWEAWEQKTIQKQPGRFFPLEIDYGVNKQVVKKSKNNADSKLPPPLIELIKMLFNVETYRSAMMEFEINMSEMPLGKLSKSNIQKGFEALTDIQNLFKSSNADPSVRDSLLIDASNRFFTVIPSIHPHIIRDEDDFKSKVKMLEALQDIEIASRLVGFDANNDDSIDDNYKKLHCDISPLPHDSEDFRLVEKFLHTTHAPTHTDWSLELEEVFSLEREGEFDKYAPYRDKVGNRMLLWHGSRLTNFVGILNQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDKKNPVGLMLLSEVALGNVYELKKAKYMDKPPQGKHSTKGLGKKMPLESEYAKWRDDVVVPCGKPVSSNVKASELMYNEYIVYNTAQVKLQFLLKVRFHHKR* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2879 1006 SMART PADR1_2 312 365 IPR012982 -
Mtr7g2879 1006 PANTHER DNA LIGASE 50 1000 - -
Mtr7g2879 1006 Gene3D BRCT domain 412 513 IPR036420 -
Mtr7g2879 1006 ProSiteProfiles BRCT domain profile. 416 506 IPR001357 -
Mtr7g2879 1006 Pfam WGR domain 546 624 IPR008893 -
Mtr7g2879 1006 Gene3D - 646 790 IPR036616 GO:0003950
Mtr7g2879 1006 Gene3D - 109 214 IPR036957 GO:0003677|GO:0008270
Mtr7g2879 1006 Gene3D - 2 108 IPR036957 GO:0003677|GO:0008270
Mtr7g2879 1006 PANTHER POLY [ADP-RIBOSE] POLYMERASE 1 50 1000 - -
Mtr7g2879 1006 SUPERFAMILY ADP-ribosylation 790 1005 - -
Mtr7g2879 1006 Pfam BRCA1 C Terminus (BRCT) domain 418 493 IPR001357 -
Mtr7g2879 1006 Gene3D - 791 1006 - -
Mtr7g2879 1006 SUPERFAMILY WGR domain-like 514 639 IPR036930 -
Mtr7g2879 1006 CDD WGR_PARP1_like 536 641 - -
Mtr7g2879 1006 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 10 93 IPR001510 GO:0003677|GO:0008270
Mtr7g2879 1006 Gene3D - 250 323 - -
Mtr7g2879 1006 SUPERFAMILY BRCT domain 415 506 IPR036420 -
Mtr7g2879 1006 SMART WGR_cls 546 629 IPR008893 -
Mtr7g2879 1006 MobiDBLite consensus disorder prediction 396 417 - -
Mtr7g2879 1006 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 116 190 IPR001510 GO:0003677|GO:0008270
Mtr7g2879 1006 ProSiteProfiles PARP alpha-helical domain profile. 656 774 IPR004102 GO:0003950
Mtr7g2879 1006 MobiDBLite consensus disorder prediction 181 225 - -
Mtr7g2879 1006 PIRSF NAD_ADPRT 3 1006 IPR008288 GO:0003677|GO:0003950|GO:0005634|GO:0008270|GO:0051287
Mtr7g2879 1006 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 114 199 - -
Mtr7g2879 1006 MobiDBLite consensus disorder prediction 385 417 - -
Mtr7g2879 1006 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 119 190 IPR001510 GO:0003677|GO:0008270
Mtr7g2879 1006 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 13 89 IPR001510 GO:0003677|GO:0008270
Mtr7g2879 1006 MobiDBLite consensus disorder prediction 89 108 - -
Mtr7g2879 1006 ProSiteProfiles WGR domain profile. 535 634 IPR008893 -
Mtr7g2879 1006 SMART zf_PARP_3 13 90 IPR001510 GO:0003677|GO:0008270
Mtr7g2879 1006 SMART zf_PARP_3 119 193 IPR001510 GO:0003677|GO:0008270
Mtr7g2879 1006 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 657 791 IPR036616 GO:0003950
Mtr7g2879 1006 SMART BRCT_7 418 496 IPR001357 -
Mtr7g2879 1006 ProSiteProfiles PARP catalytic domain profile. 781 1006 IPR012317 GO:0003950
Mtr7g2879 1006 MobiDBLite consensus disorder prediction 226 244 - -
Mtr7g2879 1006 Pfam PADR1 (NUC008) domain 314 363 IPR012982 -
Mtr7g2879 1006 Coils Coil 264 284 - -
Mtr7g2879 1006 Pfam Poly(ADP-ribose) polymerase, regulatory domain 657 787 IPR004102 GO:0003950
Mtr7g2879 1006 Pfam Poly(ADP-ribose) polymerase catalytic domain 801 1002 IPR012317 GO:0003950
Mtr7g2879 1006 CDD parp_like 657 1001 - -
Mtr7g2879 1006 MobiDBLite consensus disorder prediction 181 252 - -
Mtr7g2879 1006 Gene3D - 324 384 IPR038650 -
Mtr7g2879 1006 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 7 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2879 Mtr-Chr7 45586584 45595993 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2879 K24070 - gmx:100815900 1691.01