Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2822 ATGGACGAAGAAGTTGCAGCATCAGAAAGCAGAAAAGAAACCACCGAAGTAGCACCGGCACTCATCGCCGTCCACCCTGACGGCCACCACGTCGCCGTCGCTGTCGGACCGGACCTCCGCGTCTTCAACTTCCTTTCCAATTCTGCAGTTTCCTTACTCGATGAATCCGTTAACCAACCTTTTCATAAAGACAATATCAGAGCAATTCGATTCGGTGCAAAAGGAAAACTGTTTGTATCTGCTGGTGATGATAAAACCCTAAAAATCTGGTCACCGGAAAATTGGAAGTGTATTTCGACGGTTTTGTCGGAGAAGAGAGTTACTGCTGTTGCTATAAGCAATGATGGATTGTATGTTTGTTTTGCTGATAAATTTGGACTTGTTTGGATTGTGGATCTCAATAAAAATTCGCACGATAAGAAGCCGATACCGCTTCTTTCTCATTATTGCAGTATAATCACTAGCTTGGAATTTTCGCCGGATAATCGGTATATTTTGAGTGCTGATAGAGATTTTAAAATTCGTGTTACTAATTTTCCTAAGAATCCGTTAAATGGAGCTCACGAGATACAGAGTTTTTGTCTTGGTCATACGGAGTTTGTTTCCTGCCTTGCTTTCGTTCCAGCTCAGGAAAACCCTCATAGTCTTCTTCTATCTGGCAGTGGTGATTCCACAGTACGATTGTGGGATATCACCTCGGGTGCACTCCTATATACTTGTGAAGTTGCAATTAAGGCAGGGCTTTTAGAGTCCAATGGTAATGCAGAGGAGCATGACCATGCTGTTACTGATTTATGTACTACCTTGGATGGTTTGCTTGTTGCCGTGGCCATTCAGAGCTTGCAAGGAATTGTATTGTTGAGTTGCAACGTTTCTGCACAAACGCTTTCTGTTGCCAAGGTTGTTTCCATTGCAGGAGAGAATTTTGTCCCTACCTGCCTGGCAAACAACCCCTCTACAAGGGAATTGTGGATGGTTACAGGTGTCTCTAGTTTACCTGGATATGATTACCCCTCTTTGTCTCGTGTCCTAGTAATTTCTGGTGTTGATGTTGAGCAAGAGCCAGTTGTTCTGGGAGATGATAAGATACCCGGGGGTATAAAGCTGCTAGAAACGTTACAAGGAACTGCATCTTTTGATGACAATGCTTTTTTGGTAGCAGCTGAAGCTGTCAAAGCAGCAATGTGTAACCTATTAATAAAGAAGCAATACCCTTTCGAGAATAGAGAATATAGAAAGAAAACTAGAAATGATAGAAAACTCAAGGAATAA 1272 0.4245 MDEEVAASESRKETTEVAPALIAVHPDGHHVAVAVGPDLRVFNFLSNSAVSLLDESVNQPFHKDNIRAIRFGAKGKLFVSAGDDKTLKIWSPENWKCISTVLSEKRVTAVAISNDGLYVCFADKFGLVWIVDLNKNSHDKKPIPLLSHYCSIITSLEFSPDNRYILSADRDFKIRVTNFPKNPLNGAHEIQSFCLGHTEFVSCLAFVPAQENPHSLLLSGSGDSTVRLWDITSGALLYTCEVAIKAGLLESNGNAEEHDHAVTDLCTTLDGLLVAVAIQSLQGIVLLSCNVSAQTLSVAKVVSIAGENFVPTCLANNPSTRELWMVTGVSSLPGYDYPSLSRVLVISGVDVEQEPVVLGDDKIPGGIKLLETLQGTASFDDNAFLVAAEAVKAAMCNLLIKKQYPFENREYRKKTRNDRKLKE* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2822 423 Gene3D - 104 362 IPR015943 GO:0005515
Mtr7g2822 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 194 234 - -
Mtr7g2822 423 SMART WD40_4 139 178 IPR001680 GO:0005515
Mtr7g2822 423 SMART WD40_4 186 230 IPR001680 GO:0005515
Mtr7g2822 423 SMART WD40_4 53 91 IPR001680 GO:0005515
Mtr7g2822 423 SMART WD40_4 94 132 IPR001680 GO:0005515
Mtr7g2822 423 Gene3D - 18 103 IPR015943 GO:0005515
Mtr7g2822 423 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 28 415 IPR028884 GO:0036265
Mtr7g2822 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Mtr7g2822 423 ProSitePatterns Trp-Asp (WD) repeats signature. 217 231 IPR019775 -
Mtr7g2822 423 SUPERFAMILY WD40 repeat-like 21 348 IPR036322 GO:0005515
Mtr7g2822 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 91 - -
Mtr7g2822 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 239 IPR001680 GO:0005515
Mtr7g2822 423 PANTHER WD40 REPEAT PROTEIN 4 20 420 IPR028884 GO:0036265
Mtr7g2822 423 Pfam WD domain, G-beta repeat 62 91 IPR001680 GO:0005515
Mtr7g2822 423 Pfam WD domain, G-beta repeat 147 176 IPR001680 GO:0005515
Mtr7g2822 423 Pfam WD domain, G-beta repeat 194 230 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2822 Mtr-Chr7 44935345 44939224 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2822 62 237 Miscellaneous Gene Families AT5G08390 27.624 7.04e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2822 K15443 - gmx:100786310 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2822 7 44935345 44939224 Mtr7g2822 7 44935345 44939224 ECH