Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2679 ATGTATCTGTGTATGCTTAATTCTCAAAGTCCAGAGATGGAAAAACCACCACTACTCTTCAACTTCAAAATCATCTTACTCCTTCTCACCCAATCACTCCTCACCACATCATCACACTCTCTAAACCCCACCACCGTCACCTTCTCCGTCACCGAATACGGAGCAATCGGCGACGGCATCCACTACGATACCGTATCAATCCAAACCGCCATAGACTCCTGCCCTTACTCTATCCCCTGCCGCATCACTTTCCCATCTCCCGGTAACTACCTAACCGCAACCATATTCCTTCGATCCGGCGTCGTCCTCAACGTCGAACCCGGCGCCACCATCCTCGGCGGACCGAGACAAAAAGATTACCCGAAGGAGTCTTCGAGGTGGTACGTGGTGTTGGCAGAGAACGCGACGGATGTGGGGATTGCTGGCGGAGGTGTGGTGGATGGACAGGCGGAGAAATTTGTGGTGAGATATAATGAAAGAAAGAATGTAATGGTGAGCTGGAATCAGACTGGGGATTGTTTGGGTGATGAATGTAGACCTAGATTAATTGGTTTTCTTGGTTGCAAGAATGTTAAAGTCTTCAATGTTACTCTTAATCAACCTGCTTATTGGTGCTTACACTTGGTAAGAAGTGAAAACATAACCATTCAGGATATTGCAATTTATGGAGATTTGAATATACCAAATAATGATGGGATTGACATTGAGGACTCAAACAACACTGTAATCACTCGATGCCACATTGATACAGGGGATGATGCAATCTGTCCAAAATCATCCACTGGTCCTGTTCACAACTTAACAGTCACTAACAGTTGGATTCGATCCAAATCTTCTGCAATCAAATTTGGCAGTGCTAGTTGGTTTGAATTCAAGCATTTTGTCTTTGACAATATCACCATTGTTGATTCTCATAGAGGGCTTGCATTCCAGATTCGTGATGGAGGAAATGTAAGTGACATTGTCTTCTCAAACATAAAAATAAGCACAAGATACTATGATCCGTTATGGTGGGGGAGAGCAGAGCCTATCTATGTCACAACTTGCCCAAGAGATTCAACCTCAAAGGAGGCATCAATCTCAAATGTTCATTTCATCAACATTACAGCAAATTCTGAAAATGGAATCTTCCTCTCTGGTTCAAAGAGAGGATTGTTAAGAAACTTGAGCTTCATCAACATGAATATCACTTACAGAAGGTTCACCAGTTATGCTGGTGGGTTCTTTGACTATAGGCCAGGATGCCAAGAATTGGTTAAACATAAGACTGCAGGGATAATGATGGAGCACATTGAAGGTCTTGAGGTTAGAAATGTAGAAATGAGATGGGAAAAAAATGATCTTGAGCAGTGGAATAATCCTATGGAGTTCAAACCATCTACTGTGAATAACATTCATTTCTCTAATTTTAATTCTGTAGTGTATTCAAATAGCAAATCAAGTCAATAA 1449 0.421 MYLCMLNSQSPEMEKPPLLFNFKIILLLLTQSLLTTSSHSLNPTTVTFSVTEYGAIGDGIHYDTVSIQTAIDSCPYSIPCRITFPSPGNYLTATIFLRSGVVLNVEPGATILGGPRQKDYPKESSRWYVVLAENATDVGIAGGGVVDGQAEKFVVRYNERKNVMVSWNQTGDCLGDECRPRLIGFLGCKNVKVFNVTLNQPAYWCLHLVRSENITIQDIAIYGDLNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKSSTGPVHNLTVTNSWIRSKSSAIKFGSASWFEFKHFVFDNITIVDSHRGLAFQIRDGGNVSDIVFSNIKISTRYYDPLWWGRAEPIYVTTCPRDSTSKEASISNVHFINITANSENGIFLSGSKRGLLRNLSFINMNITYRRFTSYAGGFFDYRPGCQELVKHKTAGIMMEHIEGLEVRNVEMRWEKNDLEQWNNPMEFKPSTVNNIHFSNFNSVVYSNSKSSQ* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2679 482 SUPERFAMILY Pectin lyase-like 33 396 IPR011050 -
Mtr7g2679 482 PANTHER PECTIN LYASE-RELATED 34 474 - -
Mtr7g2679 482 Pfam Glycosyl hydrolases family 28 121 398 IPR000743 GO:0004650|GO:0005975
Mtr7g2679 482 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 34 474 - -
Mtr7g2679 482 Gene3D - 29 407 IPR012334 -
Mtr7g2679 482 SMART pbh1 238 259 IPR006626 -
Mtr7g2679 482 SMART pbh1 355 380 IPR006626 -
Mtr7g2679 482 SMART pbh1 264 285 IPR006626 -
Mtr7g2679 482 SMART pbh1 211 237 IPR006626 -
Mtr7g2679 482 SMART pbh1 318 340 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2679 Mtr-Chr7 43515580 43521583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2679 45 476 Glycoside Hydrolase AT3G57790 65.611 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2679 - - mtr:MTR_7g092470 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2679 7 43515580 43521583 Mtr7g2679 7 43515580 43521583 ECH