Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2580 ATGAAGTTCATTAACCCTAAAAACCTCTCACCCAAACGTCTTTTCCGTAAGAAGGAAAAATCCTCTGTTTCAAGATCCGACCCACTTTCATTCGGTTCATCTTCTTCCTCTGATGAATCCCTTCATAAGCCTATCACCGCCGGTTCCCAAACACCAACCAGTGTCCTCCCGGAAGTTTCCGGTGAGTGGTCAGATATCACTGTTGATGTCCAGTGTGAGCTAGCTCAAGCGTTTCGTTTAATCGACCGTGACAACGACGGCGTCGTTTCGCGTGAAGAACTTGAAGCGGTTCTCACGCGCCTTGGAGCGCGTCCTCCAACTCCTGAAGAGATCGCGTTGATGCTCAGTGAAGTTGATAGCGATGGTAAGGGTTGTATAAGCGTGGAAACGATAATGAACCGGGTTGGGTCTGGTTCGAGTTCCGGTTCGGATCCGAATCCAGAAGAAGAGTTGCGGGAAGCGTTTGAAGTGTTTGATACGGATCGTGATGGGAGAATTTCGGCTGAAGAATTGTTGAGGGTTTTTAGAGCGATCGGTGATGAACGGTGCACGTTAGAGGAGTGTAAGCGTATGATAGCAGGTGTTGATAAAAACGGGGATGGGTTCGTCTGTTTTCAAGAGTTTTCTCTTATGATGGACTTGCAGCGTTGA 651 0.4808 MKFINPKNLSPKRLFRKKEKSSVSRSDPLSFGSSSSSDESLHKPITAGSQTPTSVLPEVSGEWSDITVDVQCELAQAFRLIDRDNDGVVSREELEAVLTRLGARPPTPEEIALMLSEVDSDGKGCISVETIMNRVGSGSSSGSDPNPEEELREAFEVFDTDRDGRISAEELLRVFRAIGDERCTLEECKRMIAGVDKNGDGFVCFQEFSLMMDLQR* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2580 216 ProSitePatterns EF-hand calcium-binding domain. 159 171 IPR018247 -
Mtr7g2580 216 SMART efh_1 73 101 IPR002048 GO:0005509
Mtr7g2580 216 SMART efh_1 110 138 IPR002048 GO:0005509
Mtr7g2580 216 SMART efh_1 150 178 IPR002048 GO:0005509
Mtr7g2580 216 SMART efh_1 187 215 IPR002048 GO:0005509
Mtr7g2580 216 MobiDBLite consensus disorder prediction 1 57 - -
Mtr7g2580 216 CDD EFh 73 129 IPR002048 GO:0005509
Mtr7g2580 216 Gene3D - 141 216 - -
Mtr7g2580 216 Pfam EF-hand domain pair 148 211 IPR002048 GO:0005509
Mtr7g2580 216 Pfam EF-hand domain pair 73 129 IPR002048 GO:0005509
Mtr7g2580 216 ProSiteProfiles EF-hand calcium-binding domain profile. 183 216 IPR002048 GO:0005509
Mtr7g2580 216 MobiDBLite consensus disorder prediction 25 57 - -
Mtr7g2580 216 SUPERFAMILY EF-hand 61 212 IPR011992 -
Mtr7g2580 216 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 7 214 - -
Mtr7g2580 216 CDD EFh 150 212 IPR002048 GO:0005509
Mtr7g2580 216 PANTHER CALCIUM-BINDING PROTEIN CML35-RELATED 7 214 - -
Mtr7g2580 216 Gene3D - 66 140 - -
Mtr7g2580 216 ProSiteProfiles EF-hand calcium-binding domain profile. 146 181 IPR002048 GO:0005509
Mtr7g2580 216 ProSitePatterns EF-hand calcium-binding domain. 196 208 IPR018247 -
Mtr7g2580 216 ProSiteProfiles EF-hand calcium-binding domain profile. 73 104 IPR002048 GO:0005509
Mtr7g2580 216 ProSitePatterns EF-hand calcium-binding domain. 82 94 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2580 Mtr-Chr7 42479147 42480293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2580 1 212 EF-hand Containing Proteins AT2G41410 57.407 4.66e-64 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2580 K13448 - gmx:100815559 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2580 7 42479147 42480293 Mtr7g2580 7 42479147 42480293 ECH