Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2437 ATGGTAGTTGATCGTGAAGAATTGGAATGTCGTGGCATGGATCATGAAGATGAAGAAGAAGACGAGGAAGGGAAAAATGAATATGAAAAGGATGGATTTGTAGTTGATGACATTGAAGAAGAAGAAGAAGAGGAGCAGGAAAGGGACCAAGAAGAGCGTCAGAAGAAGAACAAAAAAAGGACAACAAAGGAGGAGTATGTCCTTGACGATGATGATTACGAGTTGCTGGAGGACAATAATATCAATGTTCACCGTCCAAAGACCAAAAAGTTCAAGCGACTCAAGAAGGGTTCCGATAATGAGGAACAAGAGTTTTCCGGAAGTGGGCGAACTGCTGATGATGAAGGTATGTGCCAATTGTGGTTTGTGTTCTTGGTTTGTAATTTTTCTCCAAAGAACGACTATAAGAAATTGAAATTGTATGCTGAAAAATACATCAAAAAACAAACATGCTTTTTAGGAACCCATCTTCAAGACATTGCTGAAGAGGAGGAGGATGCTTACACTGGAGATGAAATGGCCGACTTCATTGTGGATGAAGAAGAAGTTGATCAGAACGGAGCCCCTGTGAGGAATAAGAAGCCGAAGTGTGTAAAAAGGCCTATCTCTTCCTCAGCTTTAGCAGAAGCCCAAGAAATAATTGGAAATGTCGATGAGTTGCTCGAGGCTCGCAATCAAACTCGAGAAAAGAATGATAATAGAGAGACTAGGCTTGAAGATGAATTTGAGCCTATTGTTCTTTCTGAGAAATACATGACAGAGAGGGATGGCAGGATTAGGGAGCTCGATATTCCAGAGAGAATGCAGATATCGGAGGAGAGTACTGGTGCTCATTCACTGGATGGAAGTAGTATAGATGAAGAGAGTCAGTGGATAGTTAAACAACTTAAACATGGGGCAATCCCTTGGATTCGCAAGAAAGATTCCAGTTCCCAAAATAAAGAGGAGCTACCAATTGACCAGGATGATATTGCCAGATTTTTGGAACTGCACCACCACCACGTGCAAAAATTAGATATTCCTTTAATTGCCATGTATCGGAAGGAGAAGTGTTCAAGCTTATTGAAAGACCTAGAGCAACCTGAAGCTGGTGATGATAATTGGGATAAAAATATCAAGACTCCTATTCTAAAATGGCACAAGATACTTTGGGCTCTACAGGACCTGGACAGGAAGTGGTTGCTTCTTCAGAAGCGGAAGAGTGCCCTTCAGTTATACTACAATAATCGGTTTGAAGAAGAGTCTCATTGTGTATATGATGAGAAAAGACTAAACTTGAATAGGCTATTATTTGAATCAGTTATGAGATCATTGAAGGAGGCAGAATCAGAGAGGGAGGTTGACGATGTTGACTCCAAGTTCAACTTACATTTTCCACCAGGTGAAGCTGGTGTTGATGGACAGTACAAAAGGCCAAAAAGGAAGTCAATGTATAGCACTTTCAGTAAGGCAGGTCTGTGGGAGGTTGCAAGCAGATTTGGGTGTAGTTCTGAGCAACTCGGATTATGTCTATCTCTAGTTCAGCTGCAAGAGTTGGAAGATCCAAAAGAAACACCAGAAGAGGTGGCTTCTAACTTCACTTGTGCTATGTACGATACTCTCGAAGAAGCACTTAAATGTGCTAGGCACATGGTATCTGTTGAGATAAGTTGTGAGTCTAGCATAAAGAAATATGTCCGGAGCTACTTATTGGTGTCAACCTCTCCAACTGCCGATGGAAATATAACCATAGATTCGTTACATCAGTTTTCTGGGCTGAAGTGGCTGCGAGAGAAGCCCTTGTCTAAATTTGAGGATGCCCAATGGCTCCTTATACAGAAGGCAGAAGAGGAAAAACTCATTCAAGTCACTATCAAGCTTCCTGAAGAGTATCTTAATAAGTTGACAGAACAATTCAGTGAGCTTTATATAGTGAGTGTTAGCAGATCTGCTCAACTGTGGAATGAACAGAGGAAGCTGATACTGCACGATGCATTTTTTCGATTTCTTTTACCATCAATGGAAAAAGAAGCAAGAGGCATCTTAGGAAACAAAGCAAAGCATTGGGTACGTATGGAATATGGGAAAGCCTTCTGGAATAAGGTTTCTGTCAGGCCTTATCAACAGAAGGAAAATGATCATAGTTCGGATGATGAAGCTGCTACTAGGGTTATGGCCTGCTCTTGGGGCCCTGGAAATCCACAAACAACTTTTGTTATGTTAGATTCATCAGGAGAAGTTCAAGATGTGCTATACACTGGGTCACTTACTTTAAAATCGCAGAATCCCAATGACCAACAAAGGAAGAAGAATGACCAAGAACGTGTATTGAAGTTTATAACCGATCACCAACCGCATGTTATTGTTTTAGGAGCAGCTAACTTGTCTTGCACTAGGTTAGCAGAAGAAATATATGAGGTTATTTTTAAGATGGTCGAGGAAAACCCTGGAGATGTTGGCCATGAAATGGATGGGCTCAGCGTTGTGTATGGAGATGAAGCCCTGCCTCGTCTTTATGAAAATTCTCGAATTTCCTCTGAACAACTTCCTTCACAGAAGCTTGGTATAGTGAGGCGGGCTGTTGCTCTTGGTCGATATCTCCAGAACCCATTGGCGATGGTCGCAACATTATGTGGGCCCAGAAAGGAAATATTATCATGGAAACTGAGCCCTTTGGAGAGTTTTCTCAACCCGGATGATAAATTTGGGATGATTGAGCAGGTTATGGTAGATGTCACCAATCAGGCTGGATTAGACATTAATTTAGCAATAAGCCATGAATGGTTATTTGCTCCGTTACAATTTATTTCGGGGCTTGGTCCATGGAAGGCTGCTTCCTTGCAGAGATCGCTGGTTAGAGCTGGCGCAATTTTTACCCGGAAGGATTTTTTGACAGAACATAAACTTGGTAACAAGGTGTTTCTCAATGCCGTTGGTTTCTTGCGTGTCCGGCGAAGTGGATTGGCTGCTAGCAGCAGCCAATTTATTGATTTCCTTGATGATACACGCATTCATCCAGAATCATATATTCTTGCACAGGAGTTGGCCAGAGCTGTGTATGAGGAGGATGACACAGCTGATGCAAATGACGACGACGATGCACTAGAGATGGCCATAGAACATGCGAGAGATCGACCTAGTTATTTGAAAAACCTGGATGTTGAAGAATATGCTCGTGACAACCGTCGTCAAGACAAAATTGAAACTTTCTATGATATAAAAAGAGAATTGATTCAAAGTTTTGAGGATTGGCGAAAGCAATATGAAGAACCAAGTCAGGATGAGGAATTCTATATGATTTCAGGTGAGACTGAAGAGACTCTTGCTGAAGGTAAAATGGTCCAAGTTACAGTTTGCCGAGTGCAAGCCCAGAAAGCAATATGTGGGCTTGAATCGGGAATGACCGGAATCCTTATGAAAGAAGACTATACTGATGAATGGAGAGATCTAAATGAGTTGTCTGATAGGCTACATGAAGGTGATCTGCTCACCTGTAAAATCAAGTCAATCCAAAAGAACAGGTATCAAGTCCTCCTTGTTTGTAAAGATAGTGAAATGAGAAGTGATCGGTTACAGAACAACCAGGACCTTGATCCCAATTACCATGAAGACCAGAGCTCCTTACTGAGGGAGCAAGACAAAACTCGGAAAGAAAAGGAGGGTGCAAAGAAGCATTTCAAGCAAAGGATGATTGTTCATCCACGTTTTCAGAACATAACTGCAGATGAAGCAATGGAGTTCTTGTCGGACAAGGGTCCTGGTGAAAGTATTTTCCATCCTAGTTCTCATGGTCCTTCATACCTTACTTTGACTCTTAAAATTCATGATGGAGTATATGCCCACAAGGAAATAGTTGAAGGTGGGAAGGAACACAAGGACATTACAAGCTTACTTCGAATTGGAAAAACACTAAAAATTGGAGAAGACACTTTTGAGGATTTAGACGAGGTTATGGACCGATATTTGGATCCCTTGGTGACTCGCTTAAAGACTATGTTAAATTATCGCAAGTTCCGGACAGGTACAAAAAGAGAAGTCGATGAACTTCTGAAGTCAGAAAAGGGATTGCATCCCATGCAGATAGTGTACAGTTTTGGGGTCTCACATGAGCATCCTGGCGGATTTATATTGACTTACATAAGAAGTACAAATCCACATCATGAGTATGTTGGTCTTGACACCAAAGGATTCAGATTCCGCAATAGGATGTTTGAAGATATTGACCAACTTGTGGCATATTTTCAGAGGCACTGTTAA 4236 0.415 MVVDREELECRGMDHEDEEEDEEGKNEYEKDGFVVDDIEEEEEEEQERDQEERQKKNKKRTTKEEYVLDDDDYELLEDNNINVHRPKTKKFKRLKKGSDNEEQEFSGSGRTADDEGMCQLWFVFLVCNFSPKNDYKKLKLYAEKYIKKQTCFLGTHLQDIAEEEEDAYTGDEMADFIVDEEEVDQNGAPVRNKKPKCVKRPISSSALAEAQEIIGNVDELLEARNQTREKNDNRETRLEDEFEPIVLSEKYMTERDGRIRELDIPERMQISEESTGAHSLDGSSIDEESQWIVKQLKHGAIPWIRKKDSSSQNKEELPIDQDDIARFLELHHHHVQKLDIPLIAMYRKEKCSSLLKDLEQPEAGDDNWDKNIKTPILKWHKILWALQDLDRKWLLLQKRKSALQLYYNNRFEEESHCVYDEKRLNLNRLLFESVMRSLKEAESEREVDDVDSKFNLHFPPGEAGVDGQYKRPKRKSMYSTFSKAGLWEVASRFGCSSEQLGLCLSLVQLQELEDPKETPEEVASNFTCAMYDTLEEALKCARHMVSVEISCESSIKKYVRSYLLVSTSPTADGNITIDSLHQFSGLKWLREKPLSKFEDAQWLLIQKAEEEKLIQVTIKLPEEYLNKLTEQFSELYIVSVSRSAQLWNEQRKLILHDAFFRFLLPSMEKEARGILGNKAKHWVRMEYGKAFWNKVSVRPYQQKENDHSSDDEAATRVMACSWGPGNPQTTFVMLDSSGEVQDVLYTGSLTLKSQNPNDQQRKKNDQERVLKFITDHQPHVIVLGAANLSCTRLAEEIYEVIFKMVEENPGDVGHEMDGLSVVYGDEALPRLYENSRISSEQLPSQKLGIVRRAVALGRYLQNPLAMVATLCGPRKEILSWKLSPLESFLNPDDKFGMIEQVMVDVTNQAGLDINLAISHEWLFAPLQFISGLGPWKAASLQRSLVRAGAIFTRKDFLTEHKLGNKVFLNAVGFLRVRRSGLAASSSQFIDFLDDTRIHPESYILAQELARAVYEEDDTADANDDDDALEMAIEHARDRPSYLKNLDVEEYARDNRRQDKIETFYDIKRELIQSFEDWRKQYEEPSQDEEFYMISGETEETLAEGKMVQVTVCRVQAQKAICGLESGMTGILMKEDYTDEWRDLNELSDRLHEGDLLTCKIKSIQKNRYQVLLVCKDSEMRSDRLQNNQDLDPNYHEDQSSLLREQDKTRKEKEGAKKHFKQRMIVHPRFQNITADEAMEFLSDKGPGESIFHPSSHGPSYLTLTLKIHDGVYAHKEIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYLDPLVTRLKTMLNYRKFRTGTKREVDELLKSEKGLHPMQIVYSFGVSHEHPGGFILTYIRSTNPHHEYVGLDTKGFRFRNRMFEDIDQLVAYFQRHC* 1412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2437 1411 Gene3D SH2 domain 1212 1323 IPR036860 -
Mtr7g2437 1411 SUPERFAMILY Tex N-terminal region-like 311 694 - -
Mtr7g2437 1411 Gene3D - 985 1077 IPR042066 -
Mtr7g2437 1411 SUPERFAMILY RuvA domain 2-like 887 977 IPR010994 -
Mtr7g2437 1411 Gene3D SH2 domain 1324 1411 IPR036860 -
Mtr7g2437 1411 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 63 1410 IPR017072 GO:0032968
Mtr7g2437 1411 CDD SH2_Nterm_SPT6_like 1226 1314 IPR035019 -
Mtr7g2437 1411 ProSiteProfiles S1 domain profile. 1104 1175 IPR003029 GO:0003676
Mtr7g2437 1411 Pfam Acidic N-terminal SPT6 14 99 IPR028083 -
Mtr7g2437 1411 Coils Coil 34 61 - -
Mtr7g2437 1411 SMART S1_6 1102 1175 IPR022967 -
Mtr7g2437 1411 SMART rnase_8s 715 833 IPR006641 GO:0006139
Mtr7g2437 1411 Gene3D - 705 1096 IPR037027 GO:0006139
Mtr7g2437 1411 SUPERFAMILY RuvA domain 2-like 990 1079 IPR010994 -
Mtr7g2437 1411 Pfam Helix-hairpin-helix motif 875 976 IPR032706 -
Mtr7g2437 1411 Pfam HHH domain 991 1078 IPR041692 -
Mtr7g2437 1411 CDD SH2_Cterm_SPT6_like 1325 1411 IPR035018 -
Mtr7g2437 1411 MobiDBLite consensus disorder prediction 94 109 - -
Mtr7g2437 1411 Gene3D - 242 979 - -
Mtr7g2437 1411 MobiDBLite consensus disorder prediction 92 111 - -
Mtr7g2437 1411 MobiDBLite consensus disorder prediction 33 48 - -
Mtr7g2437 1411 MobiDBLite consensus disorder prediction 49 64 - -
Mtr7g2437 1411 Gene3D - 1097 1185 IPR012340 -
Mtr7g2437 1411 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 63 1410 - -
Mtr7g2437 1411 Coils Coil 210 237 - -
Mtr7g2437 1411 SUPERFAMILY Ribonuclease H-like 715 871 IPR012337 -
Mtr7g2437 1411 MobiDBLite consensus disorder prediction 1184 1217 - -
Mtr7g2437 1411 SUPERFAMILY Nucleic acid-binding proteins 1099 1179 IPR012340 -
Mtr7g2437 1411 MobiDBLite consensus disorder prediction 1196 1217 - -
Mtr7g2437 1411 SUPERFAMILY SH2 domain 1362 1410 IPR036860 -
Mtr7g2437 1411 MobiDBLite consensus disorder prediction 1 64 - -
Mtr7g2437 1411 Gene3D - 477 909 IPR023323 -
Mtr7g2437 1411 Gene3D - 275 476 IPR023319 -
Mtr7g2437 1411 Pfam Holliday-junction resolvase-like of SPT6 715 871 IPR028231 -
Mtr7g2437 1411 Pfam SH2 domain 1194 1410 IPR035420 -
Mtr7g2437 1411 PIRSF Spt6 4 1411 IPR017072 GO:0032968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2437 Mtr-Chr7 40803500 40815657 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2437 K11292 - gmx:100809136 2148.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2437 7 40803500 40815657 Mtr7g2437 7 40803500 40815657 ECH