Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2417 ATGGCCTCCAAGCTGCTTTTGCAGAGAAGGCTCTTCAGGTTCTTGCGACAGTCACAAGAATCCTTATACTCCTGTTCTTCTTCATCTTCCATTCAACGATCCTCGTTCCATTCTACGAAACAAACAGAAATATTGGGTTTCTCAACTTCTTCTAGAAGCTTCTGCTCTCGAAAGTCCAGTCTTGTTGATGAATCTAATGCCCCCGCACCTATTGATTACACTTCTCTACTGCAGGAGGGTGAATTCCATAGACTGGCCGAGTCCACAATACATAGCCTTCAAGAGAAATTTGAGGACTATGGAGACTTTATCGACCTTGATGGATTTGACATAGACTATGCGAATGATGTTTTGACTGTCAAACTTGGGGAGTTGGGCACCTATGTATTGAACAAACAAACACCAAACAGACAACTTTGGCTGTCTTCCCCAGTGAGTGGTCCGTCTAGGTTTGATTGGGATCAGGTTACTAAAGCTTGGATATATAGGCGGAACAAAGCAAATTTATACAAAATCTTAGAAGATGAGTTGGAGCAGTTGTCTGGCAAACCTATTGTTCTTTCCTAA 567 0.4233 MASKLLLQRRLFRFLRQSQESLYSCSSSSSIQRSSFHSTKQTEILGFSTSSRSFCSRKSSLVDESNAPAPIDYTSLLQEGEFHRLAESTIHSLQEKFEDYGDFIDLDGFDIDYANDVLTVKLGELGTYVLNKQTPNRQLWLSSPVSGPSRFDWDQVTKAWIYRRNKANLYKILEDELEQLSGKPIVLS* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2417 188 PRINTS Frataxin signature 77 95 IPR002908 GO:0008199|GO:0016226
Mtr7g2417 188 PRINTS Frataxin signature 115 130 IPR002908 GO:0008199|GO:0016226
Mtr7g2417 188 PRINTS Frataxin signature 130 145 IPR002908 GO:0008199|GO:0016226
Mtr7g2417 188 SUPERFAMILY Frataxin/Nqo15-like 69 184 IPR036524 GO:0008199|GO:0016226
Mtr7g2417 188 Pfam Frataxin-like domain 78 183 IPR002908 GO:0008199|GO:0016226
Mtr7g2417 188 Gene3D Frataxin/CyaY 71 188 IPR036524 GO:0008199|GO:0016226
Mtr7g2417 188 ProSiteProfiles Frataxin family profile. 77 185 IPR002908 GO:0008199|GO:0016226
Mtr7g2417 188 TIGRFAM mito_frataxin: frataxin 81 178 IPR017789 GO:0004322|GO:0005739
Mtr7g2417 188 PANTHER FRATAXIN 17 186 IPR002908 GO:0008199|GO:0016226
Mtr7g2417 188 SMART Frataxin_Cyay_2 77 188 IPR002908 GO:0008199|GO:0016226
Mtr7g2417 188 CDD Frataxin 77 185 - -
Mtr7g2417 188 ProSitePatterns Frataxin family signature. 129 143 IPR020895 -
Mtr7g2417 188 TIGRFAM FeS_CyaY: iron donor protein CyaY 79 186 IPR002908 GO:0008199|GO:0016226
Mtr7g2417 188 Coils Coil 163 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2417 Mtr-Chr7 40616999 40622003 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2417 K19054 - gmx:100815916 230.335