Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2402 ATGCTAGCATGTCCTAGCACCACCTTCCATTGTCCTACCACATTCCACCGCCATTCTCATCCTTCGAAGTTGCTACTCTCCAAGTCCAAGCCTCTCATCTTCCCTCCCCGTTCTAGCTTCGCAGCGTTTGGGAAATTGAAGCTCAGTTCGATTTTTTCCGGTAAGAATTGTCGCCGGTTCAATGTCAAAGCTTCAATTGATTCGTCATCGGAGCTTTTGGAGTCGGCTGACGGCGGTAGCTCGCACATTGCCCCGCATTCCGTCAAGATTCCCGTTGGTGACCGATATATTTTGGTTGAGACTGGTCATATGGGAAGGCAAGCAAGTGGTTCTGTTACAGTTACGGATGGAGAGACCATTGTGTACACCACTGTTTGTTTGGATGATATTCCTAGTGAGCCATCCGATTTTTTCCCCCTTTCTGTGAATTATCAAGAACGCTTTTCTGCCGCTGGTCGCACTAGTGGAGGTTTTTTTAAACGAGAAGGAAAGACAAAGGATCACGAGGTTCTTATTTGTAGATTGATTGATAGGCCTCTGCGTCCTACTATGCCTAAGGGCTTCTACCATGAAACTCAAATATTGTCTTGGGTTTTAAGTTATGATGGATTGCATATCCCTGATTCCTTGGCTGTCACTGCAGCTGGTATAGCACTTGCACTTTCAGAAGTGCCCACGTCAAAAGCAGTTGCTGGAGTTCGAGTTGGCCTTGTTGGCGACAAGTATATAGTAAATCCTACTTCTGAGGAGATGGAAAACTCTGAGTTGGACCTCATGCTGGCTGGCACGGATAGTGCAATATTGATGATAGAGGGTTATGGCAATTTTCTCCCAGAAGAGAAGCTACTTAAAGCTGTAGAAGTTGGTCAGGATGCAGTGCGAGCAATCTGTAATGAGGTAGAAGCCTTGGTTAAGAAATGTGGGAAGCCAAAAATGGTTGATGCCATCAAGTTGCCTCCTCCTGAGCTTTATAAACATGTTGAGGAAATCGCTGGTGATGAGTTGGTCAAAGTTCTTCAAATTAGAAACAAAATACCAAGAAGGAAAGCCCTTTCATCATTAGAAGAAAAGGTTCTTAAGATACTTTCAGAGAATGGGTTTGTCACAAATGATACTGCACCAAGGAATAATGCTGAAACCATCGCAGAGATTCTTGAGGACGAGGATGAAGATGAAGAAGTAATTGTTGATGGTGAAGTTGATGAAGGTGATGTTCATATAAAGCCAACCCCACGGAAACCAACGCGTTTATTTTCTGAGGTAGATGTGAAGTTGGTATTTAAAGATGTTACATCCAAGTTTTTGAGGAAACGTATAGTAGAGGGTGGGAAAAGGAGCGATGGGAGAACCCCAAATGAAATCCGTCCAATTAACTCAAGCTGTGGCTTATTACCTAGAGCACATGGAAGTGCTCTTTTTACGAGGGGCGAGACACAGTCGCTAGCTGTTGCTACGCTTGGAGATAACAAGATGGCACAACGAATAGACAATCTTATGGATGTTGATGATTACAAGAGGTTCTATCTGCAGTATTCCTTTCCTCCTTCATGTGTTGGGGAGGTTGGCCGGATTGGTGCACCGAGTAGAAGAGAAATTGGTCACGGGATGCTTGCTGAGAGATCCCTTGAAACAATTTTGCCTTCTGATAAAGATTTCCCTTACACTATTCGTGTTGAGAGTACTATCACAGAAAGCAATGGCTCTTCGAGCATGGCATCTGTTTGTGGAGGTTGCTTAGCATTGCAAGATGCTGGGGTTCCTATCAAGTCCTCGATTGCCGGAATTGCAATGGGTTTGGTTCTTGATACCAAGGAATTTGGTGGAGATGGAACTCCGCTTATTCTTTCCGACATAACTGGATCTGAAGATGCATCTGGAGATATGGACTTTAAGGTTGCTGGGAATGAAGATGGTATAACTGCATTTCAGATGGACATTAAGGTGGGAGGAATTACTTTGGCCATCATGAGAGAAGCACTGCTACAGGCAAAAGACGGAAGGAAACATATACTCGGAGAGATGATGAAATGCTTGCCTCCTCCAGCAAAAAGGCTTTCCAAGTATGCTCCTCTGATTCACGTTATGAAGGTCAGACCGGATAAAATAAATCTTATAATTGGTTCCGGCGGGAAAAAAGTGAAGAGCATTATTGAGCAATCTGGAATAGAGGCTATTGATACTGAAGATAATGGCACTGTGAAAATATTTGCGAGAGATTTGGCTAGTTTAGAGATGTCTAAGGCTATCATTAGTAATTTGACAATGGTTCCAACTATTGGTGATATATATAGGAACTGTGAAATCAAATCAATAGTTCCATATGGAGCGTTTGTAGAGATAGCACCCGGACGAGAGGGACTTTGCCACATTAGTGAACTGAGTTCAGCTTGGCTAGCTAAGGCAGAAGATGCTTTCAAGGTGGGAGATCGTATTGATGTAAAACTTATAGAGATAAATGACAAGGGACAACTCCGTCTTAGTCACCGAGCACTGCTTCCTGATGCAGATCCAGATAATTCAAATTCAACTGATAAGGGTTCATTGGAAGAAGTTATCAGCCTGACGAATGCTGGTTTAGTTGAAGAGAAAACTGAACAGAATGCTAAGGTTAACACTCGTAAAGGCAGAACCTCATCGAAAAGGAGTTCAGAGGATAATTCTGCACTTCCATCAAAAAAGTTTATCAGGAGATCTTCCGAGGATAAGCCTGTCACGAACAAAGACAAGATAAAGAAGAGCGACAACAAAGATGAAAGTAGTTTGGTTAGTGAAGAGGCATAA 2781 0.4308 MLACPSTTFHCPTTFHRHSHPSKLLLSKSKPLIFPPRSSFAAFGKLKLSSIFSGKNCRRFNVKASIDSSSELLESADGGSSHIAPHSVKIPVGDRYILVETGHMGRQASGSVTVTDGETIVYTTVCLDDIPSEPSDFFPLSVNYQERFSAAGRTSGGFFKREGKTKDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDGLHIPDSLAVTAAGIALALSEVPTSKAVAGVRVGLVGDKYIVNPTSEEMENSELDLMLAGTDSAILMIEGYGNFLPEEKLLKAVEVGQDAVRAICNEVEALVKKCGKPKMVDAIKLPPPELYKHVEEIAGDELVKVLQIRNKIPRRKALSSLEEKVLKILSENGFVTNDTAPRNNAETIAEILEDEDEDEEVIVDGEVDEGDVHIKPTPRKPTRLFSEVDVKLVFKDVTSKFLRKRIVEGGKRSDGRTPNEIRPINSSCGLLPRAHGSALFTRGETQSLAVATLGDNKMAQRIDNLMDVDDYKRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERSLETILPSDKDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKSSIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLAIMREALLQAKDGRKHILGEMMKCLPPPAKRLSKYAPLIHVMKVRPDKINLIIGSGGKKVKSIIEQSGIEAIDTEDNGTVKIFARDLASLEMSKAIISNLTMVPTIGDIYRNCEIKSIVPYGAFVEIAPGREGLCHISELSSAWLAKAEDAFKVGDRIDVKLIEINDKGQLRLSHRALLPDADPDNSNSTDKGSLEEVISLTNAGLVEEKTEQNAKVNTRKGRTSSKRSSEDNSALPSKKFIRRSSEDKPVTNKDKIKKSDNKDESSLVSEEA* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2402 926 SUPERFAMILY Ribosomal protein S5 domain 2-like 426 623 IPR020568 -
Mtr7g2402 926 Pfam 3' exoribonuclease family, domain 2 592 666 IPR015847 -
Mtr7g2402 926 Pfam 3' exoribonuclease family, domain 2 229 291 IPR015847 -
Mtr7g2402 926 CDD S1_PNPase 760 828 - -
Mtr7g2402 926 MobiDBLite consensus disorder prediction 863 926 - -
Mtr7g2402 926 SUPERFAMILY Ribonuclease PH domain 2-like 228 312 IPR036345 -
Mtr7g2402 926 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, CHLOROPLASTIC 68 900 - -
Mtr7g2402 926 Pfam 3' exoribonuclease family, domain 1 453 587 IPR001247 -
Mtr7g2402 926 Pfam 3' exoribonuclease family, domain 1 95 225 IPR001247 -
Mtr7g2402 926 CDD RNase_PH_PNPase_1 86 313 - -
Mtr7g2402 926 Gene3D - 406 686 IPR027408 -
Mtr7g2402 926 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 68 900 IPR012162 GO:0003723|GO:0004654|GO:0006402
Mtr7g2402 926 CDD RNase_PH_PNPase_2 453 681 - -
Mtr7g2402 926 Hamap Polyribonucleotide nucleotidyltransferase [pnp]. 84 832 IPR012162 GO:0003723|GO:0004654|GO:0006402
Mtr7g2402 926 Gene3D K Homology domain, type 1 687 759 IPR036612 GO:0003723
Mtr7g2402 926 ProSiteProfiles Type-1 KH domain profile. 690 750 - -
Mtr7g2402 926 MobiDBLite consensus disorder prediction 877 926 - -
Mtr7g2402 926 Gene3D - 74 310 IPR027408 -
Mtr7g2402 926 SUPERFAMILY Ribonuclease PH domain 2-like 584 696 IPR036345 -
Mtr7g2402 926 SUPERFAMILY Ribosomal protein S5 domain 2-like 87 225 IPR020568 -
Mtr7g2402 926 Pfam S1 RNA binding domain 767 829 IPR003029 GO:0003676
Mtr7g2402 926 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 685 754 IPR036612 GO:0003723
Mtr7g2402 926 SMART kh_6 689 754 IPR004087 GO:0003676
Mtr7g2402 926 SMART S1_6 758 829 IPR022967 -
Mtr7g2402 926 SUPERFAMILY Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 320 450 IPR036456 GO:0003723|GO:0006396
Mtr7g2402 926 CDD PNPase_KH 690 750 - -
Mtr7g2402 926 SUPERFAMILY Nucleic acid-binding proteins 755 833 IPR012340 -
Mtr7g2402 926 ProSiteProfiles S1 domain profile. 760 829 IPR003029 GO:0003676
Mtr7g2402 926 TIGRFAM polynuc_phos: polyribonucleotide nucleotidyltransferase 419 830 IPR012162 GO:0003723|GO:0004654|GO:0006402
Mtr7g2402 926 Gene3D - 760 831 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2402 Mtr-Chr7 40411885 40433504 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2402 K00962 - gmx:100785430 1351.27