Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2307 ATGGAGTTTTCGTTGTGGATTCGGTCTCTAATTTTGTTGTCTCTAACGTCCGCGGCTTTGAGCGCCACCCCGCGAAAGCCAGTAGATGTACCTTTTGGTCGAAACTATGTACCAACTTGGGCTTTTGATCACATCAAATACTTTAATGAAGGTTCTGAGATTGAACTTCTTCTTGATAAATACACTGGTACTGGTTTCCAATCTAAAGGATCATACTTGTTTGGCCACTTTAGCATGAACATAAAGATGGTTCCTGGTGATTCAGCTGGCACAGTCACCGCTTTTTATTTATCTTCCCAAAATGCGGATCATGATGAAATAGATTTTGAGTTTTTGGGTAATAGAACAGGACAACCTTATATTTTACAAACAAATGTGTTCACAGGAGGCCAAGGTAATAGAGAACAAAGAATTTTTCTCTGGTTTGATCCTACAAAAGCCTACCATAGATACTCAGTTCTATGGAACATGTATCAAATTGTGTTCTTTGTGGACAATATCCCAATCAGGGTGTTCAAAAACAGCAAGAAGTTAGGAGTGAAATTTCCATTTGATCAACCAATGAAAGTATACAATAGTTTATGGAATGCAGATGATTGGGCAACAAGAGGTGGATTAGAGAAAACAGATTGGTCCAAAGCACCATTCATAGCAGGTTACAAAAGTTTTCACATTGATGGTTGTGAAACCTCAGTTAATGCAAAGTACTGTGCAAAACAAGGTAGAAAATGGTGGAATCGACCTGAATTTCGTGACCTTGATGCTGCTCAATGGAAAAGGATAAAGTGGGTTCGTAAGAAATTTACCATTTATAATTACTGTACTGATAGAACACGTTTCCCTCAGATACCCCCTGAATGTAGAAGAGACCGTGACATTTAA 882 0.3844 MEFSLWIRSLILLSLTSAALSATPRKPVDVPFGRNYVPTWAFDHIKYFNEGSEIELLLDKYTGTGFQSKGSYLFGHFSMNIKMVPGDSAGTVTAFYLSSQNADHDEIDFEFLGNRTGQPYILQTNVFTGGQGNREQRIFLWFDPTKAYHRYSVLWNMYQIVFFVDNIPIRVFKNSKKLGVKFPFDQPMKVYNSLWNADDWATRGGLEKTDWSKAPFIAGYKSFHIDGCETSVNAKYCAKQGRKWWNRPEFRDLDAAQWKRIKWVRKKFTIYNYCTDRTRFPQIPPECRRDRDI* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2307 293 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 241 287 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Mtr7g2307 293 CDD GH16_XET 27 287 IPR016455 GO:0010411|GO:0016762|GO:0042546
Mtr7g2307 293 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 19 220 IPR000757 GO:0004553|GO:0005975
Mtr7g2307 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3 291 - -
Mtr7g2307 293 Gene3D - 17 293 - -
Mtr7g2307 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 3 291 IPR044791 GO:0004553
Mtr7g2307 293 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 291 IPR013320 -
Mtr7g2307 293 PIRSF EndGlu_transf 1 292 IPR016455 GO:0010411|GO:0016762|GO:0042546
Mtr7g2307 293 Pfam Glycosyl hydrolases family 16 33 213 IPR000757 GO:0004553|GO:0005975
Mtr7g2307 293 ProSitePatterns Glycosyl hydrolases family 16 active sites. 106 116 IPR008263 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2307 Mtr-Chr7 39471409 39473713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2307 10 293 Glycoside Hydrolase AT5G13870 78.521 2.22e-178 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2307 K08235 - gmx:100779122 531.176