Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1171 ATGTCTAGTCATTGGGGTATTATAGTTTCAGATCCATGGCTTCAAAACCAGTTTACACAAGTTGAGCTTCGCAGCTTAAAATCACAATTCATGATCATGAGGAGAGAGAGTGGGAAGCTTACCATTGGAGACTTGTCTTCAAAGATGTCAAGATTGAAAGTTGTAGGAGAAAATCTTAGTGAAGAAGAGAGAGATTCTTATATCAATGATTTGTATCAGAAATCAGATGAAGATGTTGATTTTGAATTGTTTCTCAAGGTATACTTGAAACTGCAAACTTTTGCAAGTTCTAGAACAGGAAGCAATAATGCAAAAAACACATCAGCATTCCTCAAGGTTGCCACTACAACATTGCTTCACACAATAAGCGAATCCGAGAAGGCGTCGTATGTTACACATATAAATAACTATCTTGCAGAAGATGAATTCCTCAAGAAATACCTTCCTCTTGATCCTTCAACCAACGATCTCTTCGAAATCGCAAAAGACGGTGTTCTTCTTTGTAAACTTATTAATGTGGCAGTTCCGACAACTATCGATGAACGCGCAATCAATACAAAAAGATTACTTAACCCTTGGGAAAGAAATGAAAATCACACACTTTGCCTCAACTCTGCTAAAGCAATTGGATGTACCGTAGTCAACATTGGCACTCAAGACTTAATTGAAGGAAGGCGTCATTTGGTGCTTGGTTTGATTTCACAGATTATTAAGATACAATTATTGGCGAATCTGAACCTAAAGAAAACTCCTCAACTTTTGGAACTGGTTGGTTGGGATAGTAAGGATATGGAAGAGTTGATGAGTCTACCGCCAGAAAAAATCTTGTTGAGATGGATGAATTTCCATTTGAAGAAAACAGAATATAAGAAGATTGTCGCAAATTTCTCCTCCGATGTTAAGGATGCAGAAGCTTATGCACACCTTCTAAATGTTCTTGCATCTGAATACACTAATCCATCGACATTGGCTGTGAAAAATCCGTTTGAAAGAGCAAAACTAGTTCTTGAACATGCTGAAAAGATGGGTTGCAAGAGATACTTAACTGCAAGAGATATAGTGGAAGGTTCACCAAATCTTAACCTTGCTTTTGTTGCGCATATTTTCCAAATCAGAAATGGACTTTCAGCTCTAGCAAAACAAAGTTCTCTCCTTGACTCATTGCTAGATGATACTCAAGACTCGAGAGAAGAGAGAGTTTTTCGTCTTTGGATTAATAGTCTTGGAAATTCAACATATATCAACAATGTGTTTGAGGATGTCCGGAACGGGTGGGTACTTTTAGAGACTCTTGACAAAGTGTCACCTGGGATTGTTAATTGGAAGATTGCAAACAAGCCTCCCATAAAGATGCCATTTAAAAAAGTAGAGAATTGTAACCAAGTTGTGAAAATTGGAAAACAACTTAAGTTTTCCTTGGTAAATATTGCTGGAAATGACATTGTGCAAGGATATAAAAAATTAATACTAGCATATTTGTGGCAATTGATGAGATGCAATATCCTACAACTTCTAAAGAACTTGAGATTTCACTCTCATGGGAAGGAAATAACTGATTCTGATATTCTGCAATGGGCAAACACCAAAGTCAAAAGCTCAGGAAGCCAAAGCCATATATATAGTTTCAAGGATAAAAGTTTATCAGATGGAATATTTTTTCTGGAGCTCCTCAGTTCTGTACAACCTAGAGCTGTGAATTGGGGTCTTGTGACAAAAGGAGTAACTGATGAGGAGAAAATGATGAATGCTACCTACATTATCAGTATTGCAAGAAAACTTGGTTGCTCAATATTCTTGCTTCCTGAAGACATCACTGAGGTAAATCAGAAGATGATCCTAACACTAACAGCAAGTATAATGTATTGGTTCTTAAAACACCCTGCTGTTGTTGAAGAAAGGACAAGTTCAGATTGTGAGAGTCAAGTTGAGACCATATCAAATTCAACACTTGATGATTCTGCTTCTGATTTTTCAGCAGAAGATAACATGTAA 1992 0.369 MSSHWGIIVSDPWLQNQFTQVELRSLKSQFMIMRRESGKLTIGDLSSKMSRLKVVGENLSEEERDSYINDLYQKSDEDVDFELFLKVYLKLQTFASSRTGSNNAKNTSAFLKVATTTLLHTISESEKASYVTHINNYLAEDEFLKKYLPLDPSTNDLFEIAKDGVLLCKLINVAVPTTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLIEGRRHLVLGLISQIIKIQLLANLNLKKTPQLLELVGWDSKDMEELMSLPPEKILLRWMNFHLKKTEYKKIVANFSSDVKDAEAYAHLLNVLASEYTNPSTLAVKNPFERAKLVLEHAEKMGCKRYLTARDIVEGSPNLNLAFVAHIFQIRNGLSALAKQSSLLDSLLDDTQDSREERVFRLWINSLGNSTYINNVFEDVRNGWVLLETLDKVSPGIVNWKIANKPPIKMPFKKVENCNQVVKIGKQLKFSLVNIAGNDIVQGYKKLILAYLWQLMRCNILQLLKNLRFHSHGKEITDSDILQWANTKVKSSGSQSHIYSFKDKSLSDGIFFLELLSSVQPRAVNWGLVTKGVTDEEKMMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKHPAVVEERTSSDCESQVETISNSTLDDSASDFSAEDNM* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1171 663 Gene3D - 12 91 - -
Mtr7g1171 663 Gene3D - 120 246 IPR036872 -
Mtr7g1171 663 CDD CH 396 498 IPR001715 GO:0005515
Mtr7g1171 663 ProSiteProfiles Calponin homology (CH) domain profile. 270 373 IPR001715 GO:0005515
Mtr7g1171 663 SMART ch_5 518 622 IPR001715 GO:0005515
Mtr7g1171 663 SMART ch_5 397 499 IPR001715 GO:0005515
Mtr7g1171 663 SMART ch_5 272 371 IPR001715 GO:0005515
Mtr7g1171 663 SMART ch_5 126 239 IPR001715 GO:0005515
Mtr7g1171 663 CDD CH 517 624 IPR001715 GO:0005515
Mtr7g1171 663 CDD CH 271 371 IPR001715 GO:0005515
Mtr7g1171 663 ProSitePatterns Actinin-type actin-binding domain signature 1. 397 406 IPR001589 -
Mtr7g1171 663 ProSiteProfiles Calponin homology (CH) domain profile. 395 501 IPR001715 GO:0005515
Mtr7g1171 663 Pfam Calponin homology (CH) domain 397 499 IPR001715 GO:0005515
Mtr7g1171 663 Pfam Calponin homology (CH) domain 271 372 IPR001715 GO:0005515
Mtr7g1171 663 Pfam Calponin homology (CH) domain 519 623 IPR001715 GO:0005515
Mtr7g1171 663 Pfam Calponin homology (CH) domain 147 239 IPR001715 GO:0005515
Mtr7g1171 663 PANTHER FIMBRIN/PLASTIN 1 662 IPR039959 GO:0051015|GO:0051017
Mtr7g1171 663 PANTHER ACTIN-BINDING CALPONIN-LIKE (CH) DOMAIN PROTEIN 1 662 - -
Mtr7g1171 663 Gene3D - 247 376 IPR036872 -
Mtr7g1171 663 ProSiteProfiles Calponin homology (CH) domain profile. 516 624 IPR001715 GO:0005515
Mtr7g1171 663 SUPERFAMILY Calponin-homology domain, CH-domain 122 621 IPR036872 -
Mtr7g1171 663 ProSitePatterns Actinin-type actin-binding domain signature 2. 213 237 IPR001589 -
Mtr7g1171 663 CDD CH 125 239 IPR001715 GO:0005515
Mtr7g1171 663 Gene3D - 391 508 IPR036872 -
Mtr7g1171 663 Gene3D - 509 621 IPR036872 -
Mtr7g1171 663 ProSiteProfiles Calponin homology (CH) domain profile. 124 241 IPR001715 GO:0005515
Mtr7g1171 663 SUPERFAMILY EF-hand 13 95 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1171 Mtr-Chr7 25038778 25045484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1171 1 626 EF-hand Containing Proteins AT5G55400 66.401 0.0 862
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1171 - - gmx:100805133 1140.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g1171 7 25038778 25045484 Mtr8g0269 8 2962513 2968447 PCT