Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr6g2227 | ATGATTCGCCAAAAATCAATTCTCTCATTCTTCCATAAAACCTCGCCGGAAAATCGCACTTCCGCCGCCGCAAAAACCACCGCTCCATCCGCTCCGCAATCCAACCCCGAAGATCGTACTATCAAACCAGTCGTCAATCCACCGCCGCCGTCAGATGACGTCAGAGGAACTGACACTCCGCCGGAGAAGGTGCCGCGTCAGGTTTTACCGGCTAACTACGTGGCGAACACGAAGAACTCAGGTTCTTGTTTGTTTGAGAGTATCATGCATAAGTTTATTAAGGTCGATGATGGCGAAAAGGTTAACCAGAGGAGCCAGTCATCAAATCCTGATAGCTTCCCCAAACCATCTCCATCATCAAATATATTTACCGATACTAACCGGAAAGGACTGCAGAAAGAAGTAGCAGCAGCTTTTGAACCTTTGGTGAAAGCCAAAGATAATGCTGTAAATTTCAAAGAAAAAGTTAGTCATGATAATACGTTCAGGAGCCAGTCATCAAATCATGATAGCTTCCCCAGACCGTCTCCACCATCTTCTATATTTACTAATACTAACCGGAAAGGGCTGCAGAGAGATGCAGCAGCTTTTGAACCTGTGGTGAAAGCGAAAGATAATGCTGTAAATTTTAAACAAAAGGTTAACAGTGGAAACACGTTCCTGTTTGAAAATGATGATGATATTACTGGACCAGAAACCCCAGGAATGCAACCTCTTACTTCTAATGTAAAGCGAAAAGTAGAGGATGTGTCCAAGCTTTCTTCCTTGCGGGATTCGGGCAAACGAGTCAGATTCCTTGATGATTCAATATCACTGGACATGACCAAGAAGGAGTTAGAAATAGCTAGCAAGTTTGAGTGGCTTGATCCTTCTCGAATCAGGGATGCAAATGGAAGAAGGCCCGATGATCCGTTATACGACAGAACTACACTTTATATACCTCCTGAGGTTTTGAGAAAAATGACTGCATCGCAGAAACAGTATTGGAGTGTCAAATGTAAATATATGGATGTTTTGCTGTTCTTTAAAGTGGGAAAATTTTATGAGCTTTATGAAATGGATGCTGAAATTGGCCATAAGGAGCTCGATTGGAAAATAACATTAAGTGGTGTGGGAAAATGTCGGCAGGTTGGTATATCTGAAAGTGGGATTGATGATGCTGTTAAAAACCTGGTTGCTCGTGGATATAAGGTTGGGCGAGTGGAGCAATTGGAGACATCTGAAGAAGCAAAAGCTAGAGGAGCTAATTCTGTTATTCAAAGAAAATTAGTTCAGGTAGTCACCCCATCAACCAATGTGGATGGTAATATTGGCCCTGATGCAAACCATCTTCTTGCAATAAAAGAGGAAAGCAATGGCTCGGATAATGGTTCAGTTACATATGGATTTGCTTTTGTTGATTGTGCTCGTCTTAGGTTATGGGTTGGTTCTATTGATGATGATGCGTCATGTTCTGCTTTGGGGGCTTTATTGATGCAAGTGTCACCCAAGGAAATTATATATGAACGCAGAGGGGTATCCAAAGAAGCTGAGAAAGCATTTAGAAAATTCTCTTTAAATGGTTCCACAACACTACAATTGACTCCTATGCGGTCGATCACTGACTTGGTGACCTCAGAAATTAGTGATTTAATTCACTCGAAAGGATACTTTAAGGGTTCGTCTAATTCACTGGATCATGTGCTGACCAATGTGATTCACTGTGAAATCACGTTATCTGCTCTTGGTGGACTGATAGGTCATCTGAATAGATTGATGCTAGATGAGGTCCTTCAGAACGGGGACATTTATCCATACCAGGTTTATAAGGGTTGCCTCAAAATGGATGGTCCAACCTATATAAATCTAGAAATCTTTGGCAATAGCAACGATGGTGGAAAAGCAGGTACATTGTACAAGTATCTTGATAACTGTGTTACTTCATCTGGAAAGCGGCTTCTTAGGAACTGGATCTGTTGTCCATTGAAAGATGCTGAAGGAATTAATAATAGGCTTGATGTGGTAGACCATCTAATAGCTTCCCCTGTAATTGTGTCTCATATTGCACAACATCTTCGTAAGCTTCCAGATTTGGAACTATTACTTGGCCGAACCAAGTCCAGCCTAAAAGTATCAAGCCCTATCTTACTGCCCTTGTTGGTAAAGAAAATATTGAAACAGAGGAATCATGATGTTACGGATACAGACGCCGAAACACTCACAATACTTGCTGAACTATTTTTGGAGAAAGCTAATCAATGGTTTGAAGTTGTTCACGCCATCAATTGCATTGATGTACTAAGATCTTTTGCTGTTACTTCCAGCTTTTCATGTGGAACTATGTCTAGGCCTGTTATAGTGCCAACATCAAAAAGTACAAGTAAAGATAGTGGAGCACCTGTGCTCAAAATGAAGGGACTGTGGCATCCATTTGCTCTTGGAGAGACTGGACGTGAGCCTGTTCCAAATGACATGATCCTTGGCGAGAATGAAGGTGGGCATCATCCTCGCACATTGCTTCTGACAGGGCCAAACATGGGTGGAAAATCAACACTTTTGCGTGCTACCTGTCTAGCTGTTATTATGGCCCAGTTAGGATGCTATGTGCCGTGCGAAAATTGTGTTCTTTCAGTTGTGGATATCATCTTCACACGCCTTGGAGCCACAGATAGAATCATGGCAGGCGAGAGTACCTTCTTTATTGAGTGTACAGAAACTGCATCAGTGCTTCATAATGCTACTCAAGATTCTCTTGTTATCCTTGATGAATTGGGTCGGGGAACAAGCACTTTTGATGGCTACGCCATTGCATATGCTGTATTCCGGCATCTGATTGAAAAGGTTAACTGTCGATTGCTATTTGCAACGCATTACCATCCGCTAACAAAAGAATTTGCATCTCATCCACGCGTTACAATGCAACACATGGCTTGTGCTTTCAAGTCAAAATCTGATACCCTTTCCAAACAAGATCAGGAACTAGTTTTCCTATACCGGCTTGCCCCCGGGGCATGTCCAGAGAGCTACGGATTGCAGGTTGCACTTATGGCTGGAATCCCAGAAAAAACTGTGAACGTTGCTTCAAAGGCAAGCCAGCAGATGAAAATATCAATTGGCAAAAACTTTAGGTCAAGTGAACAGAGATCAGAGTTTTCATCTCTTCACGAAGAATGGCTGAAGACCTTGATGTCTATCGCAAGAATAGAGGATGTTGAATCTTTTGATGATGATGTTTTAGATACATTAGTCTGTTTGCGGTATGAACTAAAGTCTTCGTTTAAATCAGGTAACTAG | 3273 | 0.4201 | MIRQKSILSFFHKTSPENRTSAAAKTTAPSAPQSNPEDRTIKPVVNPPPPSDDVRGTDTPPEKVPRQVLPANYVANTKNSGSCLFESIMHKFIKVDDGEKVNQRSQSSNPDSFPKPSPSSNIFTDTNRKGLQKEVAAAFEPLVKAKDNAVNFKEKVSHDNTFRSQSSNHDSFPRPSPPSSIFTNTNRKGLQRDAAAFEPVVKAKDNAVNFKQKVNSGNTFLFENDDDITGPETPGMQPLTSNVKRKVEDVSKLSSLRDSGKRVRFLDDSISLDMTKKELEIASKFEWLDPSRIRDANGRRPDDPLYDRTTLYIPPEVLRKMTASQKQYWSVKCKYMDVLLFFKVGKFYELYEMDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVKNLVARGYKVGRVEQLETSEEAKARGANSVIQRKLVQVVTPSTNVDGNIGPDANHLLAIKEESNGSDNGSVTYGFAFVDCARLRLWVGSIDDDASCSALGALLMQVSPKEIIYERRGVSKEAEKAFRKFSLNGSTTLQLTPMRSITDLVTSEISDLIHSKGYFKGSSNSLDHVLTNVIHCEITLSALGGLIGHLNRLMLDEVLQNGDIYPYQVYKGCLKMDGPTYINLEIFGNSNDGGKAGTLYKYLDNCVTSSGKRLLRNWICCPLKDAEGINNRLDVVDHLIASPVIVSHIAQHLRKLPDLELLLGRTKSSLKVSSPILLPLLVKKILKQRNHDVTDTDAETLTILAELFLEKANQWFEVVHAINCIDVLRSFAVTSSFSCGTMSRPVIVPTSKSTSKDSGAPVLKMKGLWHPFALGETGREPVPNDMILGENEGGHHPRTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPCENCVLSVVDIIFTRLGATDRIMAGESTFFIECTETASVLHNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTLSKQDQELVFLYRLAPGACPESYGLQVALMAGIPEKTVNVASKASQQMKISIGKNFRSSEQRSEFSSLHEEWLKTLMSIARIEDVESFDDDVLDTLVCLRYELKSSFKSGN* | 1091 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr6g2227 | 1090 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 791 | 1026 | IPR027417 | - | |
| Mtr6g2227 | 1090 | SUPERFAMILY | DNA repair protein MutS, domain II | 440 | 621 | IPR036678 | GO:0005524|GO:0006298|GO:0030983 | |
| Mtr6g2227 | 1090 | PIRSF | Msh6 | 1 | 728 | IPR017261 | GO:0006298|GO:0030983 | |
| Mtr6g2227 | 1090 | PIRSF | Msh6 | 711 | 1073 | IPR017261 | GO:0006298|GO:0030983 | |
| Mtr6g2227 | 1090 | CDD | ABC_MSH6_euk | 796 | 1020 | - | - | |
| Mtr6g2227 | 1090 | PANTHER | DNA MISMATCH REPAIR PROTEIN MSH7 | 315 | 1082 | - | - | |
| Mtr6g2227 | 1090 | Pfam | MutS domain II | 442 | 592 | IPR007860 | GO:0005524|GO:0006298|GO:0030983 | |
| Mtr6g2227 | 1090 | MobiDBLite | consensus disorder prediction | 102 | 125 | - | - | |
| Mtr6g2227 | 1090 | Pfam | MutS domain III | 612 | 701 | IPR007696 | GO:0005524|GO:0006298|GO:0030983 | |
| Mtr6g2227 | 1090 | SUPERFAMILY | DNA repair protein MutS, domain III | 609 | 701 | IPR036187 | - | |
| Mtr6g2227 | 1090 | SMART | DNAend | 626 | 808 | IPR007696 | GO:0005524|GO:0006298|GO:0030983 | |
| Mtr6g2227 | 1090 | PANTHER | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER | 315 | 1082 | IPR045076 | GO:0005524|GO:0006298|GO:0030983|GO:0140664 | |
| Mtr6g2227 | 1090 | SUPERFAMILY | DNA repair protein MutS, domain I | 310 | 431 | IPR016151 | GO:0005524|GO:0006298|GO:0030983 | |
| Mtr6g2227 | 1090 | SMART | mutATP5 | 829 | 1025 | IPR000432 | GO:0005524|GO:0006298|GO:0030983 | |
| Mtr6g2227 | 1090 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
| Mtr6g2227 | 1090 | MobiDBLite | consensus disorder prediction | 156 | 184 | - | - | |
| Mtr6g2227 | 1090 | Gene3D | - | 608 | 772 | - | - | |
| Mtr6g2227 | 1090 | Gene3D | DNA repair protein MutS, domain I | 280 | 440 | IPR016151 | GO:0005524|GO:0006298|GO:0030983 | |
| Mtr6g2227 | 1090 | MobiDBLite | consensus disorder prediction | 99 | 125 | - | - | |
| Mtr6g2227 | 1090 | Gene3D | - | 786 | 1073 | IPR027417 | - | |
| Mtr6g2227 | 1090 | MobiDBLite | consensus disorder prediction | 1 | 68 | - | - | |
| Mtr6g2227 | 1090 | MobiDBLite | consensus disorder prediction | 161 | 184 | - | - | |
| Mtr6g2227 | 1090 | ProSitePatterns | DNA mismatch repair proteins mutS family signature. | 910 | 926 | IPR000432 | GO:0005524|GO:0006298|GO:0030983 | |
| Mtr6g2227 | 1090 | Pfam | MutS domain V | 833 | 1027 | IPR000432 | GO:0005524|GO:0006298|GO:0030983 | |
| Mtr6g2227 | 1090 | Pfam | MutS domain I | 323 | 434 | IPR007695 | GO:0005524|GO:0006298|GO:0030983 | |
| Mtr6g2227 | 1090 | Gene3D | MutS, connector domain | 441 | 607 | IPR036678 | GO:0005524|GO:0006298|GO:0030983 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr6g2227 | Mtr-Chr6 | 39778366 | 39787491 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr6g2227 | K08737 | - | pda:103709742 | 1102.43 |
Event-related genes