Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2166 ATGAGGTCTTCTTCTTCTACATCGGGTGAAATCAACATAGCTATGAGTGCTCAGAAACTTGATGTTGATAATCGAATTTCTCTTCGATTCTATTATCGAATCGCCGATAACATACTTCGACAGGCTGATATCTTTCGTGCAGAGAGGAATATTATTGACCTATATGTCATGCTTTTAAGATTTTCTAGTTTGGTATCTGAGACAATACCGCGTCACCGGGAGTATAGGTCATCTCCATCAACCAAGAAACAATCATTGAAAAAGAGATTGTTGATTTCTTTGAATGAGCTGGAGAAGTTGAAACCGTTAGTCCAGCAAAAGATCAACGAGCTTAACAGCAGAAATGCTCACCAACAAAATGGACGGGGAAATTTTCATTCAAATAATTCAGTGGATTTTTCTTCTGCGAAAAAGCAAACTTTGCCTGGTAATGGCCAAATAAAGGCAGTAAGAGAAACTGCTAAGGAGTTTGTTTACCAAGGATCAAGTGGCCAACAGTTCACTTATGTTAGACCTGTGGAAGAGCAAGTGCGAAGACTATCTCTAACTCTGCCACCTCCAAAGCAAGAAACTCTGTCTAGACATTCTATCTTTGGTCCGAATGGGCTTAATGGGCAGTGGCGGCCACCTACTACTGGTACAGGGATCAGGTATCCAACTAACATAGATCTGTCTCCAGTTGAACTACCAAGCCTACAACGTCCCTTGGAAGATGCATCTTCGAGTAATAAAGATAATAGCATTGAAGAACTCCATAAATTAGATTTAAATTCAATTCCTACTGATAGTGAAGACAGCCAGCCCCAGCGTGCTCAGGAATCTCCTTCTCTCATCTCTTTTGAAGAAACAGACACCTCTGCTCAAGTAGAACTTATCAGACAACCTTCTCCTCCACCCGTACTTGCTGAAGTGCATGATTTGGTTCCTGCAGTATCGCCTCACGTTAATGAGGCAGGATGCAAGACAGAGATTCCATCATCTGATAGTTGTGTTCGTGCCGAGTCTCCCCTGCAACTGCACATTTCAACAGCTTTGATGGAGAATTTTATGAAACTTGCCAAGTCAAATACTAAGAAAAATTTGGAGACTTGTGGTGTCCTTGCTGGTTTGCTTAAAAACAGAAAATTTTATATTACTGCTCTAATAATCCCCAAGCAGGAGTCAACATCAGATTCTTGTCAGACTACACATGAAGAGGAAATATTTGAAGTGCAGGATAAAAGATCACTTTTCCCCCTTGGGTGGATCCATACACATCCTACTCAATCTTGTTTCATGTCATCAATTGATCTGCACACCCATTACTCATATCAGATTATGCTGCCAGAGTCTGTTGCAATAGTCATGGCGCCAACGGATAGGTCAAGAAACCATGGCATTTTCCGGCTGACAACCCCTGGTGGAATGTCTGTTATTAAACAATGTGATCAACGCGGCTTCCATCCACATAATCAACCTCCAGATGGTGGTCCTATTTACAACACATGTACAGATGTTTACATGAACCCAGATTTAAAATTTGAAGTCATTGATCTTCGGTGA 1542 0.4125 MRSSSSTSGEINIAMSAQKLDVDNRISLRFYYRIADNILRQADIFRAERNIIDLYVMLLRFSSLVSETIPRHREYRSSPSTKKQSLKKRLLISLNELEKLKPLVQQKINELNSRNAHQQNGRGNFHSNNSVDFSSAKKQTLPGNGQIKAVRETAKEFVYQGSSGQQFTYVRPVEEQVRRLSLTLPPPKQETLSRHSIFGPNGLNGQWRPPTTGTGIRYPTNIDLSPVELPSLQRPLEDASSSNKDNSIEELHKLDLNSIPTDSEDSQPQRAQESPSLISFEETDTSAQVELIRQPSPPPVLAEVHDLVPAVSPHVNEAGCKTEIPSSDSCVRAESPLQLHISTALMENFMKLAKSNTKKNLETCGVLAGLLKNRKFYITALIIPKQESTSDSCQTTHEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPESVAIVMAPTDRSRNHGIFRLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYNTCTDVYMNPDLKFEVIDLR* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2166 513 MobiDBLite consensus disorder prediction 258 287 - -
Mtr6g2166 513 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 336 442 IPR000555 GO:0005515|GO:0008233|GO:0008237
Mtr6g2166 513 MobiDBLite consensus disorder prediction 116 142 - -
Mtr6g2166 513 SUPERFAMILY JAB1/MPN domain 338 469 - -
Mtr6g2166 513 SUPERFAMILY USP8 N-terminal domain-like 25 122 - -
Mtr6g2166 513 MobiDBLite consensus disorder prediction 186 222 - -
Mtr6g2166 513 PANTHER AMSH-LIKE PROTEASE 1 513 - -
Mtr6g2166 513 Gene3D - 7 130 - -
Mtr6g2166 513 ProSiteProfiles MPN domain profile. 339 469 IPR037518 -
Mtr6g2166 513 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 1 513 - -
Mtr6g2166 513 MobiDBLite consensus disorder prediction 186 219 - -
Mtr6g2166 513 MobiDBLite consensus disorder prediction 260 287 - -
Mtr6g2166 513 MobiDBLite consensus disorder prediction 116 143 - -
Mtr6g2166 513 Pfam USP8 dimerisation domain 16 102 IPR015063 -
Mtr6g2166 513 CDD MPN_AMSH_like 338 513 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Mtr6g2166 513 Coils Coil 94 114 - -
Mtr6g2166 513 Gene3D Cytidine Deaminase, domain 2 322 513 - -
Mtr6g2166 513 SMART pad1_6 338 466 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2166 Mtr-Chr6 38743818 38750940 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2166 K11866 - gmx:100804754 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2166 6 38743818 38750940 Mtr6g2166 6 38743818 38750940 ECH