Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1648 ATGAGTTTCGCCGCATACAAAATGATGCAACACCCAACCGGAATCGACAACTGCGCTTCCGGTTACTTAACCCACTCCCGCTCCGATTTCACTCCTCGTATCCCTCCTCCTGATTCCGATGACCTTGACGCCTCCGATTGGGCCCCGCAACGCGACGTTGCGACATTTCCGAATCTTGTCGTTACTGCCGCGAATGTGCTTGAGGTTTATGTCGTGAGAATTCAACATGATGTGGCAAAGGGGAAGTTGAATGCGGATTCTAGGGTTCTTGATGGGGTGAATGGTGCCAATCTTGAACTCGTTTGTCATTACAGGTTGCATGGCAATGTTGAAAGTGTGGCTGTGTTAAGTGTTGGTGGTGGTGATGCTTCTAGGAGGCGAGATTCTGTCATCTTAACTTTTAAAGATGCAAAGATTTCAGTTCTAGAGTATGATGATTCTATCCACGGACTTCGTACCAGTTCTTTGCATTGTTTTGAGGGTCCAGAATGGCTTCATTTGAAAAGAGGCAGAGAACAATTTGCAAGAGGTCCGGTGGCGAAGGTTGATCCTCAAGGCAGGTGTGGTGGAGTTCTTGTCTATGATTTGCAAATGATAATACTGAAGACTTCTCAGGCTGGTTCTGGTTTAGTTGGGGAGGATGATGTATCGGGTTCTGGAGGTGCAGTTGCTGCTCGTGTTGACTCATCTTATCTGATAAATCTGCGTGACTTGGATATGAGGCATGTCAAAGATTTCACATTTCTTCATGGCTATATTGAACCTGTGATGGTGATATTGCATGAACATGAGCTTACTTGGGCTGGGCGTGTTTCATGGAAACATCATACTTGCACGATATCAGCACTTAGCATCAGCACAACGTTGAAGCAGCATCCACTTATTTGGTCAGCTATTAATCTCCCCCATGATGCCTACAAGCTTCTTGCAGTGCCCTCGCCAATTGGTGGTGTTCTTGTCATTGGTGCGAACACTATTCATTATCACAGTCAGTCTGCTTCATGTGCATTGTCCTTGAATAGCTACGCTGTTCCCCTTGATAATAGTCAGGAGATGCCAAGATCGAGTTTCAATGTGGAACTTGATGCTGCCAATGCAACTTGGTTATTGAATGACGTAGCCTTGCTGTCAACAAAAACTGGTGAACTGCTATTGCTTACTCTTATTTATGATGGAAGGGTTGTACAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTCTATCATCTGGTGTTACGACAATCGGAAATTCTATGTTTTTTCTCGCCAGTCGATTAGGAGACAGTATGCTGGTGCAATTTTCTTGTGGATCGGGTGTTTCAATGTTATCGTCCAATCTAAAAGAAGAGGTTGGTGATTATGATGTAGATGCTTCTTCAGCAAAGAGATTGCGGAGGTCACCTTCTGATACTTTACAAGATATGGTCAGTGGTGAGGAGCTTTCCTTGTATGGGTCTGCTCCAAATAGAACAGAATCAGCACAGAAATCCTTCTCGTTTGCAGTGAGGGATTCATTGATTAATGTTGGTCCTTTGAAAGATTTCTCGTACGGTTTAAGAATAAATGCTGATGCAAATGCTACGGGGATAGCCAAACAGAGTAACTATGAATTGGTGTGTTGTTCTGGTCATGGAAAAAACGGTTCTCTTTGTGTTCTTCGACAATCAATTTGCCCAGAAGTGATTACTGAGGTTGAGCTTCCTGGTTGCAAAGGAATATGGACTGTTTATCATAAGAGCACACGTTCACTTAATGCTGACTCTTCTAAGCTGGATGAAGATGAGTATCATGCATACCTTATTATAAGTTTGGAGTCTCGTACTATGGTACTAGAAACAGCTGATGTTCTGAGTGAGGTTACTGAAAGTGTTGACTACTATGTTCAAGGAAAAACGCTTGCTGCCGGGAATTTATTTGGGAGACGCCGTGTTATTCAAGTCTATGAACGTGGTGCTCGAATTCTGGATGGCTCTTTTATGACCCAAGATGTAAGCTTTGGAGCTTCTAACTCTGAATCTAATTATGGATCTGAGAGTGCTTTGGCACTATCCGTTTCAATAGCTGATCCATACATCTTGCTCAGAATGAGTGATGGAAGTGTTCGACTTTTGGTTGGAGATCCTAGCACCTGCAACATTTCTGTCACTTCTCCAACTTCATTTGAGAGTTCAAAGGGACCAGTTTCATCATGTACACTCTACCATGATAAAGGACCCGAGCCATGGCTAAGGAAAACAAGTACTGATGCATGGCTTTCTACTGGTGTCGGCGAGGCCATTGATGGTACTGATGGTGCAGTTCAGGACCACGGGGATGTTTATTGTGTTGTATGTTACGAAAATGGCAACCTTGAAATATTTGATGTGCCCAATTTCAGTTGTGTTTTTTCTGTGGAAAACTTTCTGTCTGGAAAGAGCCATCTTGTTGATGTTCTCACAAAAGAGGTGCCAAAGGATTCCCAAAAGGGGGATAAAGTTTCTGACGGAGTGGTCAGCCAAGACAGGAAGGATGCCCTGAATATGAAGGTTGTGGAGTTGGCCATGCAGAGATGGTCAGGGAAGCATAGCCGACCATTTCTTTTTGGGATTTTGAGTGATGGAACAACTCTTTGTTATCATGCATACCTTTATGAAAGTCCAGACGGTACTTCTAAGGTTGAGGATTCTGTATCAGCTGGCGGGCCTGGTGGCCTTACCAATACTAGTGTTTCTCGGCTTAGAAATTTGAGATTTGTTCGTGTGCCCTTAGATGTACATGCCAGGGAGGAGACATCAAATGGATCACCTTGTCAACAAATAAATATTTTCAAGAATATTGGTAGCCATGAAGGATTCTTCCTATTGGGGTCAAGACCGGCTTGGGTTATGGTTTTGAGAGAACGGCTTCGTGTTCATCCACAGCTATGTGATGGGTCTATTGTTGCTTTTACTGTCCTTCACAACATAAACTGCAATCATGGTCTCATATATGTTACTTCACAGGGTGTTTTAAAGATATGCCAATTGCCTTCTGGCTCAAACTATGATTGTTTCTGGCCTGTACAGAAAGTTCCTCTAAAAGCTACCCCACATCAAGTAACCTACTTTGCAGAGAAGAATTTGTATCCGATTATTGTTTCATTTCCTGTTCTTAAGCCACTAAATCAAGTCATTGCTTTAGTTGACCCAGATGCCAACAATCTGACTGAGAATCAGAATTTGAATTCTGATGACCAAAACCACTTTTATTCCATTGAAGAATTTGAGGTTCGTATTATGGAGCCAGAAAAATCTGGTGGCCCTTGGCAAACGAAGGCAACAATACCCATGCAAAGTTCAGAAAATGCTCTCACTGTGAGGATGGTTACACTGATGAATACATCGTCAAAAGAAAACGAAACACTTTTAGCCATTGGTACTGCTTACGTGCAAGGAGAGGATGTCGCTGCAAGAGGGCGTATACTCTTGTTCACTTTGGGGAAAAATACTGATAATCCACAAACTCTGGTTTCAGAGGTGTACTCGAAAGAATTAAAAGGTGCTATATCTGCCATGGCCGCACTTCAGGGTCATCTATTAGTAGCATCTGGTCCAAAAATTATCCTGCACAAGTGGACTGGCACTGAGTTGAATGGTGTTGCATTTTTTGATGTGCCACCGTTGCATGTTGTGAGCTTAAATATTGTAAAAAACTTCATCCTAATTGGCGACATCCATAAAAGCATATATTTTCTTAGTTGGAAAGAGCAGGGTTCTCAGCTTAGCTTATTAGCTAAGGATTTTGGTTCTCTTGATTGTTTTGCAACAGAATTTTTGATTGATGGAAGTACTCTGAGTCTCATGGTTTCAGATGATCAAAAAAATATCCAGATTTTTTACTATGCACCGAAGATGTTAGAGAGTTGGAAAGGACAGAAGCTTCTTTCAAGAGCTGAATTTCATGTCGGGGCACACGTGACTAAATTCTTAAGGCTTCAGATGTTATCCACTTCTGATCGAACTGGTTCAGCTCCAGGCTCAGATAAAACCAATCGTTTTGCCTTGTTATTTAGTACATTGGATGGTAGTATTGGCTGCATTGCTCCTCTTGATGAGATCACATTCCGTAGACTGCAGTCTTTGCAGAAAAAGCTCATTGATGCTGTATCCCACGTTGCTGGTCTAAATCCAAGAGCTTTCAGACTATTCCATTCTAATGGAAAGGCCCATCGTCCAGGCCCTGACAGTATAGTTGACTGCGAGCTGCTATGCCATTATGAAATGCTTCCATTGGAGGAACAGCTTGAAATTGCTCACCAGGTTGGAACAACTCGATCACAAATTCTCTCAAATCTAAATGATCTATCTCTTGGAACAAGCTTCTTGTAA 4347 0.4251 MSFAAYKMMQHPTGIDNCASGYLTHSRSDFTPRIPPPDSDDLDASDWAPQRDVATFPNLVVTAANVLEVYVVRIQHDVAKGKLNADSRVLDGVNGANLELVCHYRLHGNVESVAVLSVGGGDASRRRDSVILTFKDAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFARGPVAKVDPQGRCGGVLVYDLQMIILKTSQAGSGLVGEDDVSGSGGAVAARVDSSYLINLRDLDMRHVKDFTFLHGYIEPVMVILHEHELTWAGRVSWKHHTCTISALSISTTLKQHPLIWSAINLPHDAYKLLAVPSPIGGVLVIGANTIHYHSQSASCALSLNSYAVPLDNSQEMPRSSFNVELDAANATWLLNDVALLSTKTGELLLLTLIYDGRVVQRLDLSKSKASVLSSGVTTIGNSMFFLASRLGDSMLVQFSCGSGVSMLSSNLKEEVGDYDVDASSAKRLRRSPSDTLQDMVSGEELSLYGSAPNRTESAQKSFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSLCVLRQSICPEVITEVELPGCKGIWTVYHKSTRSLNADSSKLDEDEYHAYLIISLESRTMVLETADVLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGARILDGSFMTQDVSFGASNSESNYGSESALALSVSIADPYILLRMSDGSVRLLVGDPSTCNISVTSPTSFESSKGPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAVQDHGDVYCVVCYENGNLEIFDVPNFSCVFSVENFLSGKSHLVDVLTKEVPKDSQKGDKVSDGVVSQDRKDALNMKVVELAMQRWSGKHSRPFLFGILSDGTTLCYHAYLYESPDGTSKVEDSVSAGGPGGLTNTSVSRLRNLRFVRVPLDVHAREETSNGSPCQQINIFKNIGSHEGFFLLGSRPAWVMVLRERLRVHPQLCDGSIVAFTVLHNINCNHGLIYVTSQGVLKICQLPSGSNYDCFWPVQKVPLKATPHQVTYFAEKNLYPIIVSFPVLKPLNQVIALVDPDANNLTENQNLNSDDQNHFYSIEEFEVRIMEPEKSGGPWQTKATIPMQSSENALTVRMVTLMNTSSKENETLLAIGTAYVQGEDVAARGRILLFTLGKNTDNPQTLVSEVYSKELKGAISAMAALQGHLLVASGPKIILHKWTGTELNGVAFFDVPPLHVVSLNIVKNFILIGDIHKSIYFLSWKEQGSQLSLLAKDFGSLDCFATEFLIDGSTLSLMVSDDQKNIQIFYYAPKMLESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSDRTGSAPGSDKTNRFALLFSTLDGSIGCIAPLDEITFRRLQSLQKKLIDAVSHVAGLNPRAFRLFHSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIAHQVGTTRSQILSNLNDLSLGTSFL* 1449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1648 1448 Pfam CPSF A subunit region 1081 1413 IPR004871 GO:0003676|GO:0005634
Mtr6g1648 1448 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 170 667 IPR018846 -
Mtr6g1648 1448 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1 2 1437 - -
Mtr6g1648 1448 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 2 1437 - -
Mtr6g1648 1448 Gene3D - 54 445 IPR015943 GO:0005515
Mtr6g1648 1448 Gene3D - 970 1355 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1648 Mtr-Chr6 30468430 30490638 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1648 K14401 - gmx:100801803 2550.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1648 6 30468430 30490638 Mtr6g1648 6 30468430 30490638 ECH