Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1483 ATGGCCGACGATGACTACAATGACTTGGACATCGGATACGAAGATGAGCCACCAGAGCCTGGGATTGAAGAAGGTGCAGAGGTGGATGCAGATGACAACGACAACAATGATGAGATGGCTGGAGAGCCTATTGAAACCGAGGAAAAGGAACAAGAAGAGCCAACAGAAAGGCCTCGAAAGACATCGAAATATATGACCAAGTATGAGCGTGCACGGATTTTGGGTACCCGTGCTCTTCAAATCAGTATGAATGCACCTGTCATGGTTGAGTTGGAAGGGGAGACTGACCCGCTTGAGATTGCCATGAAAGAGCTTCGAGAGAAAAAGATACCCTTTACCATCCGTCGTTATTTGCCTGATGGAAGCTATGAAGACTGGGGAGTTGATGAATTGATTGTGGAAGACTCATGGAAGAGGCAAGTTGGTGGTGATTGA 435 0.4713 MADDDYNDLDIGYEDEPPEPGIEEGAEVDADDNDNNDEMAGEPIETEEKEQEEPTERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELREKKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1483 144 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 66 80 IPR020708 GO:0003677|GO:0003899|GO:0006351
Mtr6g1483 144 PANTHER DNA-DIRECTED RNA POLYMERASES II AND V SUBUNIT 6B 1 144 - -
Mtr6g1483 144 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 1 144 - -
Mtr6g1483 144 SMART RNA_pol_Rpb6_2 59 112 IPR006110 GO:0003677|GO:0003899|GO:0006351
Mtr6g1483 144 MobiDBLite consensus disorder prediction 1 63 - -
Mtr6g1483 144 Hamap DNA-directed RNA polymerase subunit Rpo6 [rpo6]. 63 118 IPR006111 GO:0003677|GO:0003899|GO:0006351
Mtr6g1483 144 SUPERFAMILY RPB6/omega subunit-like 1 134 IPR036161 GO:0003677|GO:0003899|GO:0006351
Mtr6g1483 144 Gene3D - 3 135 IPR036161 GO:0003677|GO:0003899|GO:0006351
Mtr6g1483 144 MobiDBLite consensus disorder prediction 1 49 - -
Mtr6g1483 144 PIRSF RpoK/RPB6 1 135 IPR006111 GO:0003677|GO:0003899|GO:0006351
Mtr6g1483 144 PIRSF RPB6 1 135 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Mtr6g1483 144 Pfam RNA polymerase Rpb6 61 112 IPR006110 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1483 Mtr-Chr6 24732521 24735616 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1483 K03014 - pop:7484401 223.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1483 6 24732521 24735616 Mtr6g1483 6 24732521 24735616 ECH