Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr6g1399 | ATGATGAATTCAATTACCCTGTTAGGTCATAGAATGGTTCATAAAATTTCACATTGTTTGAATTTCACGAGAATGCTCTGTGATCAACCGTTTCGCGGAGATGACGATGTTGTTAGAAATGGGTTTGACTTTGTTGAGGAGGAGCCTTTGAAGAAAATGTTTGTGGGTTCATGTGAAAATTTTGATTTGAATCATAATGAGGAAAAGGGTTTTGGTTATAATAATCAAAGAAGGGTTTTTGGTAGAGATTGTTTGTTAGAAGATTTTAGGCGGATTGATTTCGAGAGGGAAAATTCGGATTTGAATAATGATGATGATGATAAACATGGTGTTGGATATAAGCAAAGGAGGTTTTTTGTTAGAGATTGTTTGTTAGGAAATGTTAGGAAGAATGTTGAGAGGGTTCTCGAGGTTTTACGAAGAGACGGGTTGGAATTGGATTTTGATTTTAGAGTTGTTTTAGATGAGTTAGGTATAAGGCCGACGTGGATATTGGTTAGAGAGGTTTTGTATGCGGTGTTGAGAGAGGTGAATTGTGGAAACAAGGCTACAATTGGAAGATTGGCGTATAAGTTCTTTGTGTGGTGTGGTCAGAAGGAGGGTTATTGTCATACAGTTAATTCTTATCATTTGATTATGCAGATATTTGCTGAGTGTGAGGAGTTTAAGGCGATGTGGAGACTTGTTGATGAGATGATTGAGAAGGGTTTTCCTGTCACGGCTCGTACTTTCAATATTTTGATTTGTACTAGTGGTGAGGCGGGTTTTGCTAGGAATTTGGTTGTGAAGTTTATAAAGTCGAGGTCGTTTAACTATCGGCCTTATAGACATTCTTATAATGCAATTTTACATTGTCTTCTTGTGTTGAATCGGTACAAGTTGATTGAGTGGGTTTATGACCAAATGTTGTTCGAGGGTTTTTTGTCGGATGTTTTTACATATAATATTGTCATGGTTGCAAAATACAGACTTGGGAAGTTAAATCAGTTATACAGGTTGTTTCATGAGATGGGAGGAAATGGTCTTTCTCCGGATTTTCATACCTATAATATTATTCTTCATGTTCTTGGTAGAGGGGGCGAACTGTGTAAAGCTGTTGAACTTTTGAATCACATGAGAGAAAGAGGTATAGAGCCAACTGTTGTGCATTTCACAACACTCATAGATGGACTGAGTAGATCAGGACATTTGGATGACTGTGAACATATTTTTGATGAAATGGTGAGGATTGGCATCATCCCAGATGTGGTAGCATACACTGTAATGATCACCGGATATGTGGTGGCTCTTGAGTTCGAGAAAGCTCAAAAAATGTTTGATAAGATGATTTCTAGAGGACAAATCCCAAATGTATTTACCTATAATTCCATGATTCGTGGATTTTGTATGGCAGGAAAGTTCGACGAAGCATGCTCAATGCTCAAGGAAATGGAGACCAAAGGTTGTAGTCCAAATTTTGTTGTCTATAGTACATTAGTGACTAGTCTACGAAAGGCTGGAAAGCTTTCTAGAGCTCGAAAAGTATTACGGCAGATGATGGAGAAGGGGAGGAATGTCCACCATCTTCCCAAGTTAAGAGCGAGACGATATAGGAAATGA | 1599 | 0.3802 | MMNSITLLGHRMVHKISHCLNFTRMLCDQPFRGDDDVVRNGFDFVEEEPLKKMFVGSCENFDLNHNEEKGFGYNNQRRVFGRDCLLEDFRRIDFERENSDLNNDDDDKHGVGYKQRRFFVRDCLLGNVRKNVERVLEVLRRDGLELDFDFRVVLDELGIRPTWILVREVLYAVLREVNCGNKATIGRLAYKFFVWCGQKEGYCHTVNSYHLIMQIFAECEEFKAMWRLVDEMIEKGFPVTARTFNILICTSGEAGFARNLVVKFIKSRSFNYRPYRHSYNAILHCLLVLNRYKLIEWVYDQMLFEGFLSDVFTYNIVMVAKYRLGKLNQLYRLFHEMGGNGLSPDFHTYNIILHVLGRGGELCKAVELLNHMRERGIEPTVVHFTTLIDGLSRSGHLDDCEHIFDEMVRIGIIPDVVAYTVMITGYVVALEFEKAQKMFDKMISRGQIPNVFTYNSMIRGFCMAGKFDEACSMLKEMETKGCSPNFVVYSTLVTSLRKAGKLSRARKVLRQMMEKGRNVHHLPKLRARRYRK* | 533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr6g1399 | 532 | PANTHER | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED | 2 | 529 | - | - | |
| Mtr6g1399 | 532 | TIGRFAM | PPR: pentatricopeptide repeat domain | 487 | 516 | IPR002885 | - | |
| Mtr6g1399 | 532 | TIGRFAM | PPR: pentatricopeptide repeat domain | 384 | 416 | IPR002885 | - | |
| Mtr6g1399 | 532 | TIGRFAM | PPR: pentatricopeptide repeat domain | 208 | 240 | IPR002885 | - | |
| Mtr6g1399 | 532 | TIGRFAM | PPR: pentatricopeptide repeat domain | 452 | 485 | IPR002885 | - | |
| Mtr6g1399 | 532 | TIGRFAM | PPR: pentatricopeptide repeat domain | 347 | 381 | IPR002885 | - | |
| Mtr6g1399 | 532 | TIGRFAM | PPR: pentatricopeptide repeat domain | 417 | 451 | IPR002885 | - | |
| Mtr6g1399 | 532 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 485 | 519 | IPR002885 | - | |
| Mtr6g1399 | 532 | PANTHER | OS10G0506000 PROTEIN | 2 | 529 | - | - | |
| Mtr6g1399 | 532 | Pfam | PPR repeat | 312 | 342 | IPR002885 | - | |
| Mtr6g1399 | 532 | Pfam | PPR repeat | 278 | 307 | IPR002885 | - | |
| Mtr6g1399 | 532 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 205 | 239 | IPR002885 | - | |
| Mtr6g1399 | 532 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 345 | 379 | IPR002885 | - | |
| Mtr6g1399 | 532 | Pfam | PPR repeat family | 344 | 392 | IPR002885 | - | |
| Mtr6g1399 | 532 | Pfam | PPR repeat family | 414 | 462 | IPR002885 | - | |
| Mtr6g1399 | 532 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 415 | 449 | IPR002885 | - | |
| Mtr6g1399 | 532 | Gene3D | Tetratricopeptide repeat domain | 164 | 262 | IPR011990 | GO:0005515 | |
| Mtr6g1399 | 532 | Gene3D | Tetratricopeptide repeat domain | 263 | 358 | IPR011990 | GO:0005515 | |
| Mtr6g1399 | 532 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 450 | 484 | IPR002885 | - | |
| Mtr6g1399 | 532 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 310 | 344 | IPR002885 | - | |
| Mtr6g1399 | 532 | Pfam | PPR repeat | 480 | 512 | IPR002885 | - | |
| Mtr6g1399 | 532 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 380 | 414 | IPR002885 | - | |
| Mtr6g1399 | 532 | Gene3D | Tetratricopeptide repeat domain | 381 | 522 | IPR011990 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr6g1399 | Mtr-Chr6 | 21712179 | 21716773 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr6g1399 | 278 | 519 | Glycosyltransferase | AT1G05670 | 29.964 | 7.03e-33 | 131 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr6g1399 | - | - | mtr:MTR_6g045263 | 1096.26 |
Event-related genes