Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1398 ATGCAGGAAGAACATCGTCATCCCCATAATTCTGCCTCACAACAAGTGGCACATGGTACGGTGGAACATCATGATGAACATGAGAAAAAATCGGTTCTAAAGAAAGTGAAGGCAAAGGCTAAGAAAATTAAGGACACAATCACAAAGCATGGTCACCATGATGATCATGAACATGGTCATGGTCATGGTCATGATCAATATCACTATGAAAATCAACATATCCCTGATGATCATGACTTGGATGAGGAAGATGAAGTGGATGAAGACCCAGAAATCCATGGAGCACCAATATATGACAGTGCTCCAGCTAGAAATGTGACACCACAAGGGCAAGGAGTGAATTTTGGAGGCACAAGTATCATGGGAGAAGGACATGATCATGAGCCAAGAGTATTAGTTGTTAAACCAACTAGAACAACAATTGTTAGGGAAGAGATAACAATTGTGCAACCTAAGGTTGATTTGGTGGAAGATCCTCATGCACCAGGAAGTAGATTTGATGCACATGCTCCAGCCAATTATCAAACCAAAGTCACTGATCCAACTGGGGCAGGTGCTGCAGAAATGGACATAACCCCAATTGCAAAATCAATCGACAGAATGACGGTTCACAATGAACCAATACCAAGCCACCAACCACATACTCTTCCAACTATTGCTGAAACACAAACCCCTTCTCTAGGAATCCATAACCAATTTTCTCCAGAGCTCTCTACAGCAACCAAAACACCTTATCCATCATCTACTATAACACATGACCAAAATTTACCACACCTATCCAGTGAAATCAAAACTCAATATCCCCAAAGCCATGAACAATTTACACCAGTTTTTTCCACTTCAACACATAGTCAAAACCCTACTCATCACCAAAACTTGTCACAAAAGTTACCTTCTGATCCCATAAATCAGCACCATTTTGCAACAAGTCATGACCAAAACTTGCCACATTTTTCCAATGTGACAAAAACTCAATACCCTTCTGTTACAGGACATGATCATTCTACACCACATTTACAACGAACTGAACCTGGACTTGAACACTCTCCTGCCATAAGACATGATCAACATCTGCCACTTTCTTCCGGTGCGATGGAATCTGAATACCCTTCTGTTACAAGCCATGATCATTTTACACCACATTTACAAAGAACTGAACCTGGACTTAAACACACTCCTGCCATAAGACATGATCAACATCTGCCACTTTCTTCCGGTGCGATGGAATTTGAATACCCTTCTGCTGGTAGCCATGATCAGTTTAAATCAGAATTGCTACCAACTGAACCTAAGGCTCGACACCATTATGCTACAAACTTGCCACAACATTCCAGTGCAAGACCTCATCACCCTTTAAACACTAGTGAAGACCAATATTTGTCACCATATTCTAGTGCTACTGAGGCTAATCCTCAACACCAATCTGCTACAAACTTGCCACATCATTCAGGTGCAATGCAAACTCCGTACCCATCTTCTGGAAGCCATGATCAGTTTAGGGCAGGGTTACCAACTGAACACCATTCTGCTACAAGTCATGGTCAATATATGCAACCACAACACTCTAGTGCAATGAAAACTCAAAACCCTTCAGCTGGAAGCCATGAACAGTACAACAAAAACACAACACTTGGAGAACAACCGCATCTACACTATGAATCAATGGAGAACTCATCAAACCAAGGCAACAACACTTACACAGACAAAATCTACTCTGCAACTTCTGCAATTGCCGACACAGCTGCCGGTGCTAAAAATGCGGTAGCTTCGAAGCTTGGATATGGAGAGAAAGGGGAGACAACTACTGCTGAAGCGCCATTGAATCAAAGCAGTTACACAGACAAAATCTACTCTGCAGCGTCTGCAGTCACTAACAAAGCCGCTGATGCTACAAACGCGGTTGCTTCAAAGATTGGATATGGCAGTGAAACAGGCGAGACAACAACTGGTGAAAGGCCAACAAGCCAGGTCAGTTACCCATCTGTAACAGCTGCAGTCATAGACAAAGCCGCCTTGGCTAAAAACGCTGTCACGTCGAAGCTTGGATACGGTGAAGGAGGTGAAACAACAACTGGTGAAACTCCTACTAACCAGAGCAGCTACACAGACAAAATCTATAATGCAGCTTCTGCAGTCACCGACAAAGCTGCTGGTGCTAAAAATGCCGTTGCTTCAAAGCTTGGATACGGTGAAACAAATGAAACAACACCTGGTGAAAGGCAATCAAACCAGACCAGTTACCCCTCTGTGACAGCTGCTGTCATTGACAAAGCTGCCTTGGCTAAAAACGCTGTGGCATCGAAGCTTGGATACGGTGAAGAAGGCGAAACAACAACTGGTGAAACTCCATCGAACCAAAGCAGTTACACATCTACAATAGCTGACAAAGCCGCCACAGCTAAAAATACGGTTGCTTCAAAGCTTGGGTACGGTGAAGAAGGCAAAACAACAGCTGGCGATACTCCATTGAACCAAAGAAGTTACACATCTACAATAGCTGACAAAGCCGCCACAGCTAAAAATGCGGTTGCTTCAAAGCTTGGATATGGCGAAACAGGAGTAACAACAAATGAAACTCCGTCGAATCAGAGTAGCTATACAGAGAAAATTTCATCTGCAACATCTGCAATAGCTGATAAAGCTGCATCAGCTAAAAACGCAGTAGCCTCAAAGCTTGGCTTCGGCGAAAAGGGTGCAACTGAGACAGAGAGAATGACAACCTACGAAGAGAACAATTCTGGAGTCTCACCTGCAGAATATGGAAAGAATATTGCAGCTTCCTTGACAGAGAAGTTATCTCCAGTTACTGGCAAAGTTATCGGCACAGGAACTGAAAGAGTAACTGCTGGTGTAGAACAAGATAAAGGAGTATCAATGAAAGACTATTTCTCCGAAAAGTTAAGACCAGGTGAAGAAGATAGAGCTCTCTCTGAGGTAATATCTGAGAAGCTGTACAAGAAAAATGTAGATGAAGCTGTGGAAGATGTTTATGATGAAGGAGAAGGACGAAATGCAAGGAAAGTGGTTTCCAATGCTGTGCACAAGAGAGGAGGAGATGATGGAAAGGAAGTGCATAGGCCAAGAGGGAAGGTGACTGAGAGTGAAGAAGTGAAGAGGAGGTTAGGAGGTTGGGATGATGAGATTAAAGATGGGGAGTTTGGTAAAGGTATGGTTGATATGGTTAAGGAAACTGTTGGATCTTGGTTTGGGAAACCAGGGGAAAATGAATCAACTCAAGGAAGTGAAGGAATGCCTAGGAATACTGGTGCTGAGGTTGGACAGGTTCATCAAACTGCAGGTGAAAGAAGACTTCAGGATTCAGCTCATTGA 3330 0.4318 MQEEHRHPHNSASQQVAHGTVEHHDEHEKKSVLKKVKAKAKKIKDTITKHGHHDDHEHGHGHGHDQYHYENQHIPDDHDLDEEDEVDEDPEIHGAPIYDSAPARNVTPQGQGVNFGGTSIMGEGHDHEPRVLVVKPTRTTIVREEITIVQPKVDLVEDPHAPGSRFDAHAPANYQTKVTDPTGAGAAEMDITPIAKSIDRMTVHNEPIPSHQPHTLPTIAETQTPSLGIHNQFSPELSTATKTPYPSSTITHDQNLPHLSSEIKTQYPQSHEQFTPVFSTSTHSQNPTHHQNLSQKLPSDPINQHHFATSHDQNLPHFSNVTKTQYPSVTGHDHSTPHLQRTEPGLEHSPAIRHDQHLPLSSGAMESEYPSVTSHDHFTPHLQRTEPGLKHTPAIRHDQHLPLSSGAMEFEYPSAGSHDQFKSELLPTEPKARHHYATNLPQHSSARPHHPLNTSEDQYLSPYSSATEANPQHQSATNLPHHSGAMQTPYPSSGSHDQFRAGLPTEHHSATSHGQYMQPQHSSAMKTQNPSAGSHEQYNKNTTLGEQPHLHYESMENSSNQGNNTYTDKIYSATSAIADTAAGAKNAVASKLGYGEKGETTTAEAPLNQSSYTDKIYSAASAVTNKAADATNAVASKIGYGSETGETTTGERPTSQVSYPSVTAAVIDKAALAKNAVTSKLGYGEGGETTTGETPTNQSSYTDKIYNAASAVTDKAAGAKNAVASKLGYGETNETTPGERQSNQTSYPSVTAAVIDKAALAKNAVASKLGYGEEGETTTGETPSNQSSYTSTIADKAATAKNTVASKLGYGEEGKTTAGDTPLNQRSYTSTIADKAATAKNAVASKLGYGETGVTTNETPSNQSSYTEKISSATSAIADKAASAKNAVASKLGFGEKGATETERMTTYEENNSGVSPAEYGKNIAASLTEKLSPVTGKVIGTGTERVTAGVEQDKGVSMKDYFSEKLRPGEEDRALSEVISEKLYKKNVDEAVEDVYDEGEGRNARKVVSNAVHKRGGDDGKEVHRPRGKVTESEEVKRRLGGWDDEIKDGEFGKGMVDMVKETVGSWFGKPGENESTQGSEGMPRNTGAEVGQVHQTAGERRLQDSAH* 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1398 1109 Pfam CAP160 repeat 617 641 IPR012418 -
Mtr6g1398 1109 Pfam CAP160 repeat 708 730 IPR012418 -
Mtr6g1398 1109 Pfam CAP160 repeat 870 895 IPR012418 -
Mtr6g1398 1109 Pfam CAP160 repeat 661 684 IPR012418 -
Mtr6g1398 1109 Pfam CAP160 repeat 571 595 IPR012418 -
Mtr6g1398 1109 Pfam CAP160 repeat 787 811 IPR012418 -
Mtr6g1398 1109 Pfam CAP160 repeat 827 850 IPR012418 -
Mtr6g1398 1109 Pfam CAP160 repeat 749 772 IPR012418 -
Mtr6g1398 1109 MobiDBLite consensus disorder prediction 336 354 - -
Mtr6g1398 1109 MobiDBLite consensus disorder prediction 379 394 - -
Mtr6g1398 1109 MobiDBLite consensus disorder prediction 441 499 - -
Mtr6g1398 1109 MobiDBLite consensus disorder prediction 1066 1109 - -
Mtr6g1398 1109 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 1 270 IPR037491 GO:0009737
Mtr6g1398 1109 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 660 693 IPR037491 GO:0009737
Mtr6g1398 1109 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 827 859 IPR037491 GO:0009737
Mtr6g1398 1109 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 471 604 IPR037491 GO:0009737
Mtr6g1398 1109 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 787 818 IPR037491 GO:0009737
Mtr6g1398 1109 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 603 651 IPR037491 GO:0009737
Mtr6g1398 1109 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 690 740 IPR037491 GO:0009737
Mtr6g1398 1109 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 748 782 IPR037491 GO:0009737
Mtr6g1398 1109 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 855 1106 IPR037491 GO:0009737
Mtr6g1398 1109 MobiDBLite consensus disorder prediction 729 748 - -
Mtr6g1398 1109 MobiDBLite consensus disorder prediction 1071 1085 - -
Mtr6g1398 1109 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 690 740 - -
Mtr6g1398 1109 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 748 782 - -
Mtr6g1398 1109 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 660 693 - -
Mtr6g1398 1109 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 603 651 - -
Mtr6g1398 1109 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 787 818 - -
Mtr6g1398 1109 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 1 270 - -
Mtr6g1398 1109 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 827 859 - -
Mtr6g1398 1109 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 471 604 - -
Mtr6g1398 1109 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 855 1106 - -
Mtr6g1398 1109 MobiDBLite consensus disorder prediction 508 541 - -
Mtr6g1398 1109 MobiDBLite consensus disorder prediction 47 76 - -
Mtr6g1398 1109 MobiDBLite consensus disorder prediction 1 110 - -
Mtr6g1398 1109 MobiDBLite consensus disorder prediction 278 335 - -
Mtr6g1398 1109 MobiDBLite consensus disorder prediction 278 394 - -
Mtr6g1398 1109 MobiDBLite consensus disorder prediction 441 541 - -
Mtr6g1398 1109 MobiDBLite consensus disorder prediction 19 33 - -
Mtr6g1398 1109 MobiDBLite consensus disorder prediction 159 186 - -
Mtr6g1398 1109 MobiDBLite consensus disorder prediction 237 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1398 Mtr-Chr6 21698171 21703776 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1398 - - mtr:MTR_6g045273 2088.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1398 6 21698171 21703776 Mtr6g1398 6 21698171 21703776 ECH