Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1348 ATGTCCGGCGCTGCTATGGAAATTGTGAAATCTGAGATGAAATCCTACATCTGGCTTCAAACTGAGGATGGTTCTATTCAACAAGTAGAAGCGGAGGTTGCGATGTTTTGCCCTATGATTTTCAATGAAGTAATTCAGACAGGCATGGGGTCTTCCAAAACTTATGCTATATCTCTTCCGCAACGTGTCACTCCTGCAATGTTGGGTTTAGTACTTGATTACTGTAGGTTCCACCGAGCACCGGGACGTTCTAATAAGGAGCGCAAAACTTTTGATGAGAAATTTATCCGTATTGATACAAAGAAGTTATGCGAGTTGGCGTCTGCTGCACACTACCTTCGACTGAGGCCTTTGGTTGATCTGACCACCCGGGCACTTGCTCGGAAGATTGAAGGAAAAACTCCTGAAGAGATTCGTGAAACATTTCATTTGCCTGATGATCTCACTGAGGAGGAGAAGCTTGAGCCTATCAAAAACATAACTGATGATCCACATATCCGACTTTTGAATAGATTATATGCTAGAAAGAGGAGAGAATTAAAAGAGAGGAATAAATTGAAGGATGTTGAGGTTGAGGAGGAACCAAAGGATGAACGCTCAGTTGATGATCTGCTTTCATTTATTAATGGCCCAGATGGAGATATAAAAGGAACTAGATCAAACAAGAATAAAAAGAAGAATAGGAGAAGGAAAGACACCGCAAAAGATCCGTCTTTTAGAAGTGCAAATGAAAATCATAGTAAGGAGTTCAATCCTCTTCCTTCTGCATATCATAATGCCAATTTTGAAGATGCCTTAGAGGCCTCTGGCGTGCAAGATCATATTGCTGTTAATTTTTCTTCAAAGATCGAGTTTAATGAAAGTGATTTTGATGATGATGACTTCGATCCTGCAATGAAGGAGGAGCTTGACAGGGAAGTTGAAGATTTTGCACGCAGATTAAATTCAGATTGGCCTGCAAGGATTCAAATTTTACCTTCACACCAAAACAGAAGACTAACACCAATTTCCATGAATAGCAATGGTTCAACCAACCGATGTACAAGTTTTGGTCGGAGATAG 1062 0.4049 MSGAAMEIVKSEMKSYIWLQTEDGSIQQVEAEVAMFCPMIFNEVIQTGMGSSKTYAISLPQRVTPAMLGLVLDYCRFHRAPGRSNKERKTFDEKFIRIDTKKLCELASAAHYLRLRPLVDLTTRALARKIEGKTPEEIRETFHLPDDLTEEEKLEPIKNITDDPHIRLLNRLYARKRRELKERNKLKDVEVEEEPKDERSVDDLLSFINGPDGDIKGTRSNKNKKKNRRRKDTAKDPSFRSANENHSKEFNPLPSAYHNANFEDALEASGVQDHIAVNFSSKIEFNESDFDDDDFDPAMKEELDREVEDFARRLNSDWPARIQILPSHQNRRLTPISMNSNGSTNRCTSFGRR* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1348 353 Pfam Skp1 family, tetramerisation domain 17 79 IPR016073 GO:0006511
Mtr6g1348 353 Gene3D Potassium Channel Kv1.1; Chain A 10 160 IPR011333 -
Mtr6g1348 353 PANTHER OS03G0107000 PROTEIN 1 273 - -
Mtr6g1348 353 SUPERFAMILY POZ domain 15 79 IPR011333 -
Mtr6g1348 353 Pfam Skp1 family, dimerisation domain 117 153 IPR016072 GO:0006511
Mtr6g1348 353 SUPERFAMILY Skp1 dimerisation domain-like 90 159 IPR036296 GO:0006511
Mtr6g1348 353 MobiDBLite consensus disorder prediction 188 203 - -
Mtr6g1348 353 MobiDBLite consensus disorder prediction 333 353 - -
Mtr6g1348 353 SMART skp1_3 14 115 IPR001232 GO:0006511
Mtr6g1348 353 PANTHER SKP1 1 273 IPR016897 GO:0006511
Mtr6g1348 353 MobiDBLite consensus disorder prediction 188 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1348 Mtr-Chr6 20739057 20746300 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1348 - - gmx:100775387 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1348 6 20739057 20746300 Mtr6g1348 6 20739057 20746300 ECH