Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1346 ATGGCATCACTTTATCAACTACTACAAGTACAATACAACATTGTTATCACACTCTTCACACACACAACAAGAGCAACAGAGAATCACACTATTCTTGTCATGACTTCTTCTGGGTTTTCATTATCTTCAACTGCAGAGGAGGTTACTCATGGGATTCATGGGAGTGGTCTTACTGCAATTGTTACAGGAACAACACATGGTATTGGCATTGAGACTGCAAGAGTTCTTGCCTTGCGTGGTGTTCATGTGATTATGGGAGTGAGAAATATTAATGCTGGAAAAGTTGTTAGAGAAGAAATACTTAAGGAGATTCCTAAAGCTAAAGTTAGTGTGATGGAGTTAGATTTAAGTTCAATGGCATCTGTTAGAAAATTTGCATCAGAATTCAATTCCTCTTCTCTTCCATTGAACATTCTCATAAACAACGCAGGAATTTGTGCAGCACCTTTCACACTGTCCAAAGACAACATTGAACTACAATTTGCCACAAATTATTTAGGTCATTTTCTTTTAACAAACCTTTTGTTAGACACTATGAAGAAAACAGCTAATGAAAGCAAGAAAGAAGGAAGAATTATTATTGTCTCATCTGATGGTCACAATTACACATATCCTGAAGGAATCCTTTTTGAAAAAATTAATGATGAGTCAAGTTTCGACAGATGGAAGGCATATGGTCAATCTAAGCTTGCTAACATTTTACATGCCAATGAACTTGCAAGATATCTCAAAGAAGATGGGGTTAATATTACTGCAAATTCTCTTCATCCAGGAGCTATTATCACCAACATTGTTAGTCCTGAGGTTGGTCAAACTATCCCGAAAGGTCTACTAAATGTTCTTGGGGAATTTGTAATTAAAAGTGTCCAGCAGGGAGCAGCAACAACATGCTATGTAGCATTGAATCCACAGCTGAATGGTATTAGTGGAAAGTTTTTTTCTGACAGTAATGTGGTTGAACCAAGCTCACAGGCAAAAGACACTGATTTGGCAAAGAAACTTTGGGATTTCAGCTTGAAATTAATTAAATAG 1032 0.3663 MASLYQLLQVQYNIVITLFTHTTRATENHTILVMTSSGFSLSSTAEEVTHGIHGSGLTAIVTGTTHGIGIETARVLALRGVHVIMGVRNINAGKVVREEILKEIPKAKVSVMELDLSSMASVRKFASEFNSSSLPLNILINNAGICAAPFTLSKDNIELQFATNYLGHFLLTNLLLDTMKKTANESKKEGRIIIVSSDGHNYTYPEGILFEKINDESSFDRWKAYGQSKLANILHANELARYLKEDGVNITANSLHPGAIITNIVSPEVGQTIPKGLLNVLGEFVIKSVQQGAATTCYVALNPQLNGISGKFFSDSNVVEPSSQAKDTDLAKKLWDFSLKLIK* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1346 343 PANTHER RETINOL DEHYDROGENASE 35 343 - -
Mtr6g1346 343 Gene3D - 53 343 - -
Mtr6g1346 343 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 35 343 - -
Mtr6g1346 343 CDD retinol-DH_like_SDR_c_like 56 335 - -
Mtr6g1346 343 PRINTS Glucose/ribitol dehydrogenase family signature 58 75 IPR002347 -
Mtr6g1346 343 PRINTS Glucose/ribitol dehydrogenase family signature 134 145 IPR002347 -
Mtr6g1346 343 PRINTS Glucose/ribitol dehydrogenase family signature 184 200 IPR002347 -
Mtr6g1346 343 PRINTS Glucose/ribitol dehydrogenase family signature 248 265 IPR002347 -
Mtr6g1346 343 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 56 319 IPR036291 -
Mtr6g1346 343 Pfam short chain dehydrogenase 58 206 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1346 Mtr-Chr6 20717682 20723777 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1346 60 197 Acyl Lipid Metabolism Gene Families AT1G62610 30.556 1.50e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1346 - - cam:101490020 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1346 6 20717682 20723777 Mtr6g1346 6 20717682 20723777 ECH