Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1339 ATGAGTCCTTCTGAGTTTACATTATCATCCTCTGCAGAAGAAGTTATTCCTTCTGAGTTTACATTATCTTCCACTGCAGAGGAAGTTACTCATGGGATCGATGGAAGTGGTCTTGCTGCGATTGTTACAGGAACAACACATGGTATTGGCATTGAGACTGCAAGAGTTCTTGCCTTGCGTGGTGTTCATGTGATTATGGGAGTGAGAAATATTAATGCTGGAAAAATTGTTAGAGAAGAAATACTTAAGGAGATTCCTAAAGCTAAAGTTGATGTAATGGAGTTAGATTTAAGTTCAATGGCATCTGTTAGAAAATTTGCATCAGAATTCAATTCCTCTTCTCTTCCATTGAACATTCTCATAAACAATGCAGGAATTTGTGCACCACCTTTCACACTCTCCAAAGACAACATTGAACTACAATTTGCCACAAATCATTTAGGTCATTTTCTTTTAACAAACCTTTTGTTAGACACTATGAAGAAAACAGCAAATGAAAGCAAGAAAGAAGGAAGAATTATTAATGTCTCATCTGATGGTCACGGTTATACATATGATGAAGGAATCCTTTTTGATAACATTAATGATGAATCAAGTTACCAAAGATGGAGGGCATATGGTCAATCTAAGCTTGCTAACATTTTACATGCCAATGAACTTGCAAGAAATTTCAAGGAAGATGGGGTTGGTATTACTGCAAATTCTCTTCATCCAGGATGTATTGGCACCAATATTGTAAGTCGTGAGGTTGGTCAAACTATGCCGCTAGATCTACGAAAAAGCCTAGGGAAAATTGTAGTTAAAACTATCCAACAGGGAGCAGCAACAACATGCTATGTAGCATTGAACCCAAAAGTGAAGGGTATTAGTGGAAAGTTTTTTTGTGACAGTAATGTGGCTGAACCAAGCTCACTGGGAAAAGACACTGATTTGGCAAAGAAACTTTGGGATTTCAGCATGAATTTAATTAAATAG 975 0.3692 MSPSEFTLSSSAEEVIPSEFTLSSTAEEVTHGIDGSGLAAIVTGTTHGIGIETARVLALRGVHVIMGVRNINAGKIVREEILKEIPKAKVDVMELDLSSMASVRKFASEFNSSSLPLNILINNAGICAPPFTLSKDNIELQFATNHLGHFLLTNLLLDTMKKTANESKKEGRIINVSSDGHGYTYDEGILFDNINDESSYQRWRAYGQSKLANILHANELARNFKEDGVGITANSLHPGCIGTNIVSREVGQTMPLDLRKSLGKIVVKTIQQGAATTCYVALNPKVKGISGKFFCDSNVAEPSSLGKDTDLAKKLWDFSMNLIK* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1339 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Mtr6g1339 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Mtr6g1339 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Mtr6g1339 324 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Mtr6g1339 324 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Mtr6g1339 324 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Mtr6g1339 324 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Mtr6g1339 324 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Mtr6g1339 324 CDD retinol-DH_like_SDR_c_like 40 316 - -
Mtr6g1339 324 Gene3D - 33 324 - -
Mtr6g1339 324 Pfam short chain dehydrogenase 39 180 IPR002347 -
Mtr6g1339 324 PANTHER RETINOL DEHYDROGENASE 17 324 - -
Mtr6g1339 324 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 17 324 - -
Mtr6g1339 324 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 300 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1339 Mtr-Chr6 20307168 20312880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1339 37 129 Lipid Metabolism Gene Families AT1G24470 36.559 9.11e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1339 - - cam:101490020 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1339 6 20307168 20312880 Mtr6g1339 6 20307168 20312880 ECH