Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1235 ATGGAAACACCATTGTTAATCAAAAGCTTTACTTCAGAAAATGATTACTTGGCAGTGAAAAGTTTGAAGGATGTTAAACATGTTTTGTGGAGTGAGACAGTGAAGATATGGAAGATAGCACTTCCAGTGGCCTTGTGTTCACTGTTTCAGTTCCTCACAAACTCTTCAACTTCAGTCTATGCTGGTCATCTTGGAGACGTTGAGCTTTCTTCTTTCTCTCTTTTTCAAAGTATCATCAACTGCATCTATTCCTTGCTGTTTGGTATGTCAACTGCACTAGCAACACTCTGTGGCCAAGCTTATGGTGCAAGACAATTTCAAAGTGCTGGTATTTATCTTCAAAGGTCATGGATTATACTCTTCACCACTTGCATACTAATCTTGCCTATTCATATATATGCAACCCCAATCTTAAAATTTCTTGGCCAAGAACAAGAAATAGCTGATCTAGCTGGCAAATATGCAATTCAAATAATTCCTTGCATGTTTTCCTTTGCTATCAATTTACCCATCAAGAAATTTCTTCAAGCACAATGCAAAGTTAATGTTATTATGTGCATATCACTATTGTTTTTACTCATACAAAATGGTCTACTTTACATCTTCATTTCTGTATTTGAGTGGGGAATATTTGGCTTAGCTCTGGCAAGTAATATCACAGGATGGGGATTTTCTATTGCTCTAGTAATTTATGTCATTGGTTGGTCCAAAGAAGGATGGAATGGATTATCTTGGATGGCATTTAGGGAACTATGGGAATTTACAATACTAAGTCTTGGTTCATCTGGAATGATTTGTTTAGAACAGTGGTATAGTGTTTGCATTATCCTTCTTGCTGGTCACCTTGATAATCCTGTGATTGCTCTTGGTTCCTATTCAATTTGTCTTAATATTCAGGGTTGGAACTCCATGCTGCTTCTTGGAGTAAGTACAGCATTAAGTGTTCGTGTCTCTCATACACTTGGAATGTCGCATCCAAGAGCATCCAAATACTCTTTCTTGGTAGCAATGTCTCAGTCTCTTCTCATTGGAATCATTTTCATGACTGTTATTTTCTTGAGCAAACAAGAATTTGCCACCATCTTTACCAAAAGTGTGGATATGATACATGCTGCTAGTGAATTAGCATATTTTCTTGGTATAACCATGGTTCTCAACAGTATTTCACAAACTATATCAGGTGTGGTCATTGGATGTGGATGGCAAGTTATGGTTGGTTACATAAACTTGGGATGTTATTACATTATTGGACTCCCTATTGCAATTTTCCTTGGTTTCAACCAGCATTTAGGGGTCAAGGGTTTATGGGGAGGCACGATATGCGCCATTATTCTTCAGATAATAATCCTCGTAGTCATTATTTGTAAGACCAACTGGACCAAGGAGGTAGAGCAAACAGCAAATCGCATGCAAATCTGGATCTCTAACAAGTAA 1434 0.3752 METPLLIKSFTSENDYLAVKSLKDVKHVLWSETVKIWKIALPVALCSLFQFLTNSSTSVYAGHLGDVELSSFSLFQSIINCIYSLLFGMSTALATLCGQAYGARQFQSAGIYLQRSWIILFTTCILILPIHIYATPILKFLGQEQEIADLAGKYAIQIIPCMFSFAINLPIKKFLQAQCKVNVIMCISLLFLLIQNGLLYIFISVFEWGIFGLALASNITGWGFSIALVIYVIGWSKEGWNGLSWMAFRELWEFTILSLGSSGMICLEQWYSVCIILLAGHLDNPVIALGSYSICLNIQGWNSMLLLGVSTALSVRVSHTLGMSHPRASKYSFLVAMSQSLLIGIIFMTVIFLSKQEFATIFTKSVDMIHAASELAYFLGITMVLNSISQTISGVVIGCGWQVMVGYINLGCYYIIGLPIAIFLGFNQHLGVKGLWGGTICAIILQIIILVVIICKTNWTKEVEQTANRMQIWISNK* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1235 477 PANTHER PROTEIN DETOXIFICATION 1 472 - -
Mtr6g1235 477 CDD MATE_eukaryotic 32 465 IPR045069 GO:0042910|GO:1990961
Mtr6g1235 477 Pfam MatE 264 421 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Mtr6g1235 477 Pfam MatE 42 196 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Mtr6g1235 477 PANTHER MULTIDRUG RESISTANCE PROTEIN 1 472 - -
Mtr6g1235 477 TIGRFAM matE: MATE efflux family protein 42 436 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1235 Mtr-Chr6 17729010 17740068 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1235 K03327 - gmx:100789611 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1235 6 17729010 17740068 Mtr6g1235 6 17729010 17740068 ECH