Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1052 ATGTTAGGCCAGGTTGACCTTTCAAATAATCAATTATCTGGACAAATTCCAAACTGTTGGAGCAATTTCAAGTCATTAGCTTATGTTGATTTGAGTCACAACAATTTTTCAGGGAAGATTCCTACTTCAATGGGATCACTTGTAAAACTGCAAGCATTACTATTGACGAACAATAGCTTAATAGGGGAGATCCCTTTCTCCTTAATGAACTGCACAAAGTTAGTAATGCTTGATTTAAGAGAAAATAGATTACAAGGACTCATCCCTTATTGGATTGGAATTGAATTAAAACGGTTGCAAGTTTTAAGTTTACAAAAGAATAACTTCTTTGGAAGTTTACCATTTGAAATTTGTTATATACAAAACATTAAACTCTTTGATGTATCATTGAACAATCTATCCGGACGGATTCCCGAATGTATTAAAAATTTCACTTCAATGACTCAAAAAGGTTCTGCACAAGGTTTTGCCGATCAACGTTATAATATCACCCATGGATTGATCACTTATTTCAGAGCCTATAAATTGAATGCATTCTTGACATGGAAAGGTGTAGAACAAGAGTTCAACAACAATGGCTTGTCTCTTCTGAAAAGCATAGATCTATCCAGCAATCACTTCTCAGAAGAGATTCCACCAGAAATAGCAAATTTGATTCAATTGGTCTCGTTGAACTTATCAAGAAACAACTTGACGGGGAAAATTCCTTCAAATATTGGAAAGCTAACATCACTTGACTTTCTTGATTTCTCAAGAAATAATTTGCTTTGTTCAATTCCATCTAGTCTTTCACAAATACACCGGCTTGGTGTGTTAGATTTGTCACATAATCAATTATCGGGAGAAATTCCAAGGAGTACACAACTACAAAGTTTCAATGCCTCAAGTTACGAAGATAATCTTGATCTTTGTGGAGCACCACTTGTAAAATTGTGCGTTGATGGAGAGCCATCACAAGAACCAAAAGGGAAAATTCAAGACGATGAAGATTTGCTTCGGAATCGAGGATTTTATATAAGCCTGACATTTGGATTTATTTTAGGCTTTTGGGGAGTATTTGGTTCAATCCTAATCAAGCGTTCTTGGCGACATGCTTATTTCAAGTTCATGAACAATTTATGGGATAATATTTACGTGAAATGCAGAAGGTAG 1152 0.3507 MLGQVDLSNNQLSGQIPNCWSNFKSLAYVDLSHNNFSGKIPTSMGSLVKLQALLLTNNSLIGEIPFSLMNCTKLVMLDLRENRLQGLIPYWIGIELKRLQVLSLQKNNFFGSLPFEICYIQNIKLFDVSLNNLSGRIPECIKNFTSMTQKGSAQGFADQRYNITHGLITYFRAYKLNAFLTWKGVEQEFNNNGLSLLKSIDLSSNHFSEEIPPEIANLIQLVSLNLSRNNLTGKIPSNIGKLTSLDFLDFSRNNLLCSIPSSLSQIHRLGVLDLSHNQLSGEIPRSTQLQSFNASSYEDNLDLCGAPLVKLCVDGEPSQEPKGKIQDDEDLLRNRGFYISLTFGFILGFWGVFGSILIKRSWRHAYFKFMNNLWDNIYVKCRR* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1052 383 Pfam Leucine rich repeat 5 60 IPR001611 GO:0005515
Mtr6g1052 383 Gene3D Ribonuclease Inhibitor 1 320 IPR032675 -
Mtr6g1052 383 PRINTS Leucine-rich repeat signature 2 15 - -
Mtr6g1052 383 PRINTS Leucine-rich repeat signature 266 279 - -
Mtr6g1052 383 ProSiteProfiles Leucine-rich repeat profile. 268 290 IPR001611 GO:0005515
Mtr6g1052 383 Pfam Leucine Rich Repeat 221 242 IPR001611 GO:0005515
Mtr6g1052 383 PANTHER BNAC08G45300D PROTEIN 2 379 - -
Mtr6g1052 383 SUPERFAMILY L domain-like 4 310 - -
Mtr6g1052 383 PANTHER OS10G0469600 PROTEIN 2 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1052 Mtr-Chr6 14416173 14418012 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1052 5 370 Receptor kinase-like Gene Family AT3G05660 34.783 2.22e-52 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1052 - - mtr:MTR_6g038730 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1052 6 14416173 14418012 Mtr6g1052 6 14416173 14418012 ECH