Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1048 ATGTTGTCAATATCTAGTCTTGATAAATCCAATAGTTGGTTGCAAATGGTTGGTAAGCTACTAAAACTGAGAGAACTAGAGTTAATAAGTTGTGGCCTTTCTGATCATTTTATCCATTCTTTGAGTAAATCGAAGTTCAATTTTTCCACATCTCTTTCTATCCTTGATCTCTCTTCGAACAACTTCGCATCATCTTTGATATTCCAGTGGGTGTCAAACATTAGTCCCAATCTTGTAAGGCTTGACCTTAGTAATAATCATATGGTTGATTTCCCATCAAATCATTTTTCCTATAGGCTTCCAAGATTGAGAGAACTAAGATTATCTAGTAACATGTTCACATCATTCATGATACTCCAGTCGTTGTCAAACATAAGTTCCAATCTTGTTAAACTTGACCTTTCTTTAAACTTCTTGGAGGCTCCTCCATCCAATGTCTATGGCTTAGTGATGAAGTCTCTTGAGGTACTTGACCTGTCAGAAAATAGATTGAAGGGTGGGGTGTTTAAATTCTTCATGAATGTATGTACCATACAATCTTTAGGTTTGAGTCAAAACAATTTAACAGAAGACCTTCAATCAATTATTCACAATTTGTCTGGTGGATGTGTTAGAAACTCACTTCAAGTGTTAGACCTTGGTTGGAATGGAATCACTGGAGGACTACCCGACCTTTCTGCATTCACATCATTGAAAACATTGGATCTTACTTTAAATCAATTGAGTGGAAAAATTCTTGAAGGAAGTAGCTTGCCATTTCAGTTGGAGAATTTATCCATCAAATCAAACTCTTTAGAAGGGGGAATTCCAAAATCATTTTGGATGAATGCATGTAAGTTGAAATCATTGGATATGTCCAATAACAGATTCAGTGGTGAGCTTCAAGTAACAATCCATCACTTATCTATATGTGCTAGATACTCACTCCAACAATTAGATCTAAGCGGTAATCAAATCAATGGCACACTACCTGATCTCTCGATATTCTCATCTTTGGAAATATTTGATATTTCTGAAAATAGACTAAACGGAAAGATATTTGAAGATATTCGATTTCCAACTACACTAAGGACACTGAGCATGGATTCGAACTCTTTAAGTGGTGTGATCTCTGACTTCCATTTTTCTGGTATGTCAATGTTAGAGGAATTATCCTTGTCAAGCAATTCACTAGCAATGAGATTTCCCCAAAATTGGGTCCCTCCTTTTCAATTGGACACTATAGGATTGAGATCCTGCAAACTTGGTCCTACATTTCCTAACTGGATTCAGACACAAAAACACATTCAAAATCTTGATATTTCTAATGCTGGAATTTCAGATAATGTTCCAGAGTGGTTTTGGGCTAAATTATCATTAAAAGAGTGCAGAAGCATCAACATTTCAAACAATAATCTCAAAGGATTAATTCCAAATCTTCAAGTCAAAAATTATTGTTCTATTTTATCTCTTTCATCAAATGAATTTGAAGGGCCTATTCCACCATTTCTAAAAGGTTCTACACTTATTGACTTGTCCAAAAACAAATTCTCCGATTCTCTTCCATTCCTATGTACAAATGGTATAGATTCAATGTTAGGCCAGTTTGACCTTTCAAATAATCAATTATCTGGACGAGTTCCAGACTGTTGGAACAATTTCAAGGCATTAGTTTATCTCGATTTGAGCCACAACAATTTTTTAGGGAAGATTCCTACTTCAATGGGATCACTTGTAGAACTGCAAGCATTACTATTGAGGAACAACAGCTTAACAGAGGAGATCCCTTTCTCCTTAATGAACTGCAGAAAGTTAGTAATGCTTGATTTGAGAGAAAATAGATTAGAAGGACCCGTCCCTTATTGGATTGGAAGCAAATTAAAAGAGCTGCAAGTTTTAAGCTTAAAAAGTAATCACTTCTTTGGAAGTTTACCATTCAAACTTTGTTATCTACAAAACATTCAGCTCTTTGATTTCTCATTGAACAATCTATCTGGAGGGATTCCAAAATGCATTAAAAATTTCACTTCAATGACTCAAAAAGCTTCATCACAAGGTTTTACAGATCATTATTTTATTGCCAGCCAAGGAACTGTTTATTATAGAAGAGACTATCAATTGAATGCATTCTTGATGTGGAAAGGTGTAGAACAATTTTTCAACAACAATGGATTGCTTCTTCTAAAAAGTATAGATCTCTCAAGCAATCACTTTTCACACGAGATTCCACCTGAAATAGCAACTTTGGTTCAATTAGTCTCACTAAATTTATCAAGAAACAACTTGACAGGGAAAATTCCTTCAAATATCGGAAAATTAACATCACTTGACTTTCTTGATTTGTCACAAAATAAGTTGCTTGGTTCAATTCCTTCTAGTCTTTCCAAAATAGATCGGATTGGTGTGTTAGATCTGTCACATAATCAATTGTCTGGAGAAATTCCAACGAGTACACAACTACAAAGTTTCAATGCCTCAAGTTACGAAGATAATCTTGATCTTTGTGGAGCACCACTTGTAAAACTGTGCGCTGAAGATGGGCCACCGCATGAACCAAATGGAAAAATTCAAGACGATGAAGATTTGCTTCTCAATCGAGGATTTTACATAAGCCTGACATTTGGATTTATTATAGGCTTTTGGGGAGTATTTGGTTCAATCCTAATCAAGCGTTCTTGGCGACATGCTTATTTCAAGTTCTTGAACAATTTAGTGGATAATATTTACGTCAAATGCAGATGGTGGCTCAAAGATTAA 2736 0.3516 MLSISSLDKSNSWLQMVGKLLKLRELELISCGLSDHFIHSLSKSKFNFSTSLSILDLSSNNFASSLIFQWVSNISPNLVRLDLSNNHMVDFPSNHFSYRLPRLRELRLSSNMFTSFMILQSLSNISSNLVKLDLSLNFLEAPPSNVYGLVMKSLEVLDLSENRLKGGVFKFFMNVCTIQSLGLSQNNLTEDLQSIIHNLSGGCVRNSLQVLDLGWNGITGGLPDLSAFTSLKTLDLTLNQLSGKILEGSSLPFQLENLSIKSNSLEGGIPKSFWMNACKLKSLDMSNNRFSGELQVTIHHLSICARYSLQQLDLSGNQINGTLPDLSIFSSLEIFDISENRLNGKIFEDIRFPTTLRTLSMDSNSLSGVISDFHFSGMSMLEELSLSSNSLAMRFPQNWVPPFQLDTIGLRSCKLGPTFPNWIQTQKHIQNLDISNAGISDNVPEWFWAKLSLKECRSINISNNNLKGLIPNLQVKNYCSILSLSSNEFEGPIPPFLKGSTLIDLSKNKFSDSLPFLCTNGIDSMLGQFDLSNNQLSGRVPDCWNNFKALVYLDLSHNNFLGKIPTSMGSLVELQALLLRNNSLTEEIPFSLMNCRKLVMLDLRENRLEGPVPYWIGSKLKELQVLSLKSNHFFGSLPFKLCYLQNIQLFDFSLNNLSGGIPKCIKNFTSMTQKASSQGFTDHYFIASQGTVYYRRDYQLNAFLMWKGVEQFFNNNGLLLLKSIDLSSNHFSHEIPPEIATLVQLVSLNLSRNNLTGKIPSNIGKLTSLDFLDLSQNKLLGSIPSSLSKIDRIGVLDLSHNQLSGEIPTSTQLQSFNASSYEDNLDLCGAPLVKLCAEDGPPHEPNGKIQDDEDLLLNRGFYISLTFGFIIGFWGVFGSILIKRSWRHAYFKFLNNLVDNIYVKCRWWLKD* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1048 911 Gene3D Ribonuclease Inhibitor 497 842 IPR032675 -
Mtr6g1048 911 ProSiteProfiles Leucine-rich repeat profile. 308 330 IPR001611 GO:0005515
Mtr6g1048 911 Gene3D Ribonuclease Inhibitor 203 495 IPR032675 -
Mtr6g1048 911 Pfam Leucine rich repeat 721 779 IPR001611 GO:0005515
Mtr6g1048 911 Gene3D Ribonuclease Inhibitor 6 201 IPR032675 -
Mtr6g1048 911 SUPERFAMILY L domain-like 2 244 - -
Mtr6g1048 911 Pfam Leucine Rich repeat 229 247 IPR001611 GO:0005515
Mtr6g1048 911 Pfam Leucine Rich repeat 207 220 IPR001611 GO:0005515
Mtr6g1048 911 SUPERFAMILY L domain-like 492 834 - -
Mtr6g1048 911 Pfam Leucine Rich Repeat 77 97 IPR001611 GO:0005515
Mtr6g1048 911 PRINTS Leucine-rich repeat signature 309 322 - -
Mtr6g1048 911 PRINTS Leucine-rich repeat signature 766 779 - -
Mtr6g1048 911 PANTHER OS10G0469600 PROTEIN 204 351 - -
Mtr6g1048 911 PANTHER OS10G0469600 PROTEIN 352 903 - -
Mtr6g1048 911 PANTHER OS10G0469600 PROTEIN 48 199 - -
Mtr6g1048 911 SUPERFAMILY L domain-like 156 665 - -
Mtr6g1048 911 SMART LRR_typ_2 76 98 IPR003591 -
Mtr6g1048 911 SMART LRR_typ_2 151 171 IPR003591 -
Mtr6g1048 911 SMART LRR_typ_2 378 402 IPR003591 -
Mtr6g1048 911 SMART LRR_typ_2 100 121 IPR003591 -
Mtr6g1048 911 SMART LRR_typ_2 620 644 IPR003591 -
Mtr6g1048 911 SMART LRR_typ_2 718 741 IPR003591 -
Mtr6g1048 911 SMART LRR_typ_2 766 790 IPR003591 -
Mtr6g1048 911 SMART LRR_typ_2 742 765 IPR003591 -
Mtr6g1048 911 SMART LRR_typ_2 571 595 IPR003591 -
Mtr6g1048 911 PANTHER BNAC08G45300D PROTEIN 204 351 - -
Mtr6g1048 911 PANTHER BNAC08G45300D PROTEIN 352 903 - -
Mtr6g1048 911 PANTHER BNAC08G45300D PROTEIN 48 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1048 Mtr-Chr6 14280554 14284871 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1048 151 901 Miscellaneous Gene Families AT1G74190 28.652 2.01e-76 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1048 - - mtr:MTR_6g038730 1749.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1048 6 14280554 14284871 Mtr6g1048 6 14280554 14284871 ECH