Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1046 ATGCCAATGATGAATCCATCTTGTTTGAAATTGATACAAACAATATTTCTCATGTGTTTGGCGTTGCAAGCAGACCTTGTTTGTTCAAAAGAGGTTGTTAGGTGCATACAAAGTGAGAGACAGGCACTCCTTAAATTCAAGGCTGGCCTTATTGATGTGAATGGCATGTTGTCATCTTGGACAACGGCAGATTGCTGCCAATGGTATGGAATTCGTTGCAGCAACCTCACTGGCCATGTACTTATGCTCGATCTTCATGGTGATTATAACAAGAATGAAGATCAATTTTATATCGGAGGTGATGTCGACAAGTCAGTGATGGAGTTGAAGCAATTAAAGTATTTGAACTTCAGTGGGAATTATTTTAAAGGCAGTAATAGTTTAGGTTTTTTTGGTTCTCTAAGAAACATAAGATACCTTGACCTTTCACGTTGTCGCTTTGGTGGAAAAATTTCAATTCAATTTGAGTCTCTTCCGCATTTGAAATATTTGAGTCTTTCCTCGAATGATCTCGATGGTTTGATTCCTCATCAACTTGGAAATCTCTCCAATGTTCGATTTATTGATCTAAGCAACAATCATTTAGAAGGAAGCATTCCATCTAAACTCGGAAATCTCTCCAACTTGCAATTTCTTGATCTCAGCTACAATCGTTTGGAAGGAAGCATACCATCCCAACTTGAAAATCTCTCCAACTTGAAATTTCTTCATCTCAAAAACAATGATTTGGAAGGAAGGATTCCATCCCAACTTGGAAATCTCTCCAACTTGCAATTTCTTGATCTCTTTGGAAATTCTTTAAAAGGAAAAATACCATATCAACTTGGAAAGCTTACAAACCTACAAGATCTTTATCTTGGAGGAGGATATGGTGATAGTACTCTGATAATTGACAACGAGGATCACAGTGGAGGTAAGTGGTTGTTGAATCTAACTTCTTTAACCCATCTTCAGATGTTGTCAATATCTAATCTTGATAGATTTAATAGTTGGTTGCAATTGGTTGGTAAGCTACCAAAACTGAAAGAACTAAGTTTAGAAAGTTGTGGTCTTTCTGATCATATTACTCTTTCATCGAGTCCTTTAAATCTTAACTTTTCCAGTTCTCTCTCTATCCTTGACCTCTCTCGGAACAACTTTGTGTCATTCAGTATTTTTGAGTGGGTGTCGAAAATTAGTCCCAATCTTACTCATCTTGACCTTAGGGGTAATCAGTTGGTTAATCCCACACCAAAATATTTTGCCACGAAAATGATTAGCAGGCTTCCAAATTTGAGAGAACTAATATTATATGATAACATGTTCACATCATTCATGGTATTCCAGTGGCTTTCAAACATAAGTTCCAATCTTGTTAAGCTTGACCTTTCCAACAACCTCTTGGAGGATTCTCCATCATATGACTATGACATAGTTATGAGGTCTCTTGAGGAACTTGACCTATCACAAAATAGTTTGAAGGGTGGGATGTTTAAATCCATCAGAAATATATGCACCTTACGTTCTTTAGATCTGAATTTAAACAATTTCACCCAAGGCCTTCAATCAATTATTCATGATTTGTCTAGTGGTTGTGTTAGAAACTCACTTCAATGGTTAAATCTTTATTCTAGTAAAATCACTGGAACTGTACCTGATCTTTCTATGTTCACATCATTAAAATTTTTGGATCTTTCTAATAATCTACTGAGTGGAAAGATTCCTGAAGGTAGTAGCTTGCCATGTCAAATGGAAGATTTTTCCATTGCAGCAAACTCTTTAGATGGAAGAATTCCAAAATCGTTTTGGATGAATGCATGTAAGTTGAAGTCATTGGATCTTACAAGCAATAGTTTCAGTGATGAGCTTCAAGTAATAATCCATCATTTATCTAGATGTGCTAGATACTCACTCCAACAATTATATTTGAGATTTAATCAAATCAATGGAACACTACCTGATCTCTCAATATTCTCATTCTTGGAAATATTTGATATTTCTAAAAATAAGCTAAACGGGGAGATACATGAAGATATTCGGTTTCCAACTAAACTAAGGACACTACGGATGGATTCAAACTCTTTACATGGTGTGATCTCTGAATTCCATTTTTCTGGTATGTCAATGTTAAAGGAATTAGACTTGTCTGACAATTCACTAGTATTGAGATTTACCGAAAACTGGGTCCCGCCTTTTCAGTTGCAAACTATAGGATTGGGATCTTGCAAACTTGGTCTTACATTTCCAAAATGGATTCAGACACAAAATCACTTTCAGGATATTGATATTTCTAATTCTGGAATTTCAGATAATGTTCCCGAGTGGTTTTGGGCTAAACTATCATCACAAGAGTGCAAGACAATCAACATTTCATACAACAATCTCAAAGGATTAATTCCGAATCTTCATGTAAAAAATCATTGTTCTTTTTTATCTCTTGCATCAAATCAATTTGAAGGCTCCATTCCACCATTTCTCAGAGGTTCTGTATCTATTGATTTGTCCAAAAACAAATTCTCTAACTCTATTCAATTTTTATGTGAAAATGGTATAGATGAAGCGTTAGGCCAGTTTGACCTTTCAAATAATCAATTATCTGGAAGAATTCCAGATTGTTGGAGAAATTTCAAATCATTAGCTTATGTAGATTTGAGCCACAACAATTTTTCAGGGAAAATTCCTTCTTCAATGGGATCACTCGTAGAACTGCAAGCATTAATGTTGAGGAACAACAGTTTAATGGAGGATATCCCTTTCTCCTTAATGAACTGCACAAAGTTAGTAATGCTGGATTTGAGAGAAAATGGATTAGAAGGACTGATCCCTTATTGGATTGGAAGTGAATTAAAAGAGTTGCAAGTTTTAAGCTTACAAAGGAATCACTTCTTTGGAAGTTTCCCCCTCGAACTTTGCTACCTACAAAACATCCAACTCTTTGATGTATCATTGAACAATCTATCTGGAGGGATTCCCAAATGCATTCAAAATTTCACTTCAATGAGTGTTAAAGGTTCATCACAAGGTTTTGCCAATCATCGGTATGTTACCAACAAAGGATTTACAGAAATGGATATTCCATATGAATTGAATGCACTCTTAACATGGAAAGGTGTAGAACAAGTGTTCAACAACAATCAATTGTTTCTTCTAAAAAGTGTAGATCTCTCGAGCAATCACTTTTCACAAGAGATTCCACCTGAAATAGCTAATTTGATTCAATTGGTCTCATTGAACTTATCAAGAAATAACTTCACAGGGAAAATTCCTTCAAGAATTGGAAAGCTAACATCACTTGACTTTCTTGATTTGTCTAGAAATAAGTTGATTGGTTCAATTCCTTCTAGTCTTTCTCAAATAGACCGGCTTGGTGTGTTAGATTTGTCACATAACCAATTATCTGGAGAGATTCCAAAGAGTACACAACTACAAAGTTTCAATGCCTCAAATTACGAAGATAATCTTGATCTTTGTGGACCACCACTTGTAAACTTGTGCGTCAAAGGGGAGCCACCACATGAACCAAATGGAAAAATTCAAGACGATGAAGATTTGCTTCTCAATCGTGGATTTTACATAAGCCTGACATTTGGATTTATTATAGGCTTTTGGGGAGTATTTGGTTCAATCCTAATCAAGCGTTCTTGGCGACATGCTTATTTCAAGTTCTTGAACAATTTAGTGGATGATATTTACGTGAAATGCAGATGGTGGCTCAAAGATTAA 3702 0.3555 MPMMNPSCLKLIQTIFLMCLALQADLVCSKEVVRCIQSERQALLKFKAGLIDVNGMLSSWTTADCCQWYGIRCSNLTGHVLMLDLHGDYNKNEDQFYIGGDVDKSVMELKQLKYLNFSGNYFKGSNSLGFFGSLRNIRYLDLSRCRFGGKISIQFESLPHLKYLSLSSNDLDGLIPHQLGNLSNVRFIDLSNNHLEGSIPSKLGNLSNLQFLDLSYNRLEGSIPSQLENLSNLKFLHLKNNDLEGRIPSQLGNLSNLQFLDLFGNSLKGKIPYQLGKLTNLQDLYLGGGYGDSTLIIDNEDHSGGKWLLNLTSLTHLQMLSISNLDRFNSWLQLVGKLPKLKELSLESCGLSDHITLSSSPLNLNFSSSLSILDLSRNNFVSFSIFEWVSKISPNLTHLDLRGNQLVNPTPKYFATKMISRLPNLRELILYDNMFTSFMVFQWLSNISSNLVKLDLSNNLLEDSPSYDYDIVMRSLEELDLSQNSLKGGMFKSIRNICTLRSLDLNLNNFTQGLQSIIHDLSSGCVRNSLQWLNLYSSKITGTVPDLSMFTSLKFLDLSNNLLSGKIPEGSSLPCQMEDFSIAANSLDGRIPKSFWMNACKLKSLDLTSNSFSDELQVIIHHLSRCARYSLQQLYLRFNQINGTLPDLSIFSFLEIFDISKNKLNGEIHEDIRFPTKLRTLRMDSNSLHGVISEFHFSGMSMLKELDLSDNSLVLRFTENWVPPFQLQTIGLGSCKLGLTFPKWIQTQNHFQDIDISNSGISDNVPEWFWAKLSSQECKTINISYNNLKGLIPNLHVKNHCSFLSLASNQFEGSIPPFLRGSVSIDLSKNKFSNSIQFLCENGIDEALGQFDLSNNQLSGRIPDCWRNFKSLAYVDLSHNNFSGKIPSSMGSLVELQALMLRNNSLMEDIPFSLMNCTKLVMLDLRENGLEGLIPYWIGSELKELQVLSLQRNHFFGSFPLELCYLQNIQLFDVSLNNLSGGIPKCIQNFTSMSVKGSSQGFANHRYVTNKGFTEMDIPYELNALLTWKGVEQVFNNNQLFLLKSVDLSSNHFSQEIPPEIANLIQLVSLNLSRNNFTGKIPSRIGKLTSLDFLDLSRNKLIGSIPSSLSQIDRLGVLDLSHNQLSGEIPKSTQLQSFNASNYEDNLDLCGPPLVNLCVKGEPPHEPNGKIQDDEDLLLNRGFYISLTFGFIIGFWGVFGSILIKRSWRHAYFKFLNNLVDDIYVKCRWWLKD* 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1046 1233 Pfam Leucine rich repeat N-terminal domain 37 74 IPR013210 -
Mtr6g1046 1233 Gene3D Ribonuclease Inhibitor 574 820 IPR032675 -
Mtr6g1046 1233 ProSiteProfiles Leucine-rich repeat profile. 1114 1136 IPR001611 GO:0005515
Mtr6g1046 1233 Pfam Leucine rich repeat 1043 1101 IPR001611 GO:0005515
Mtr6g1046 1233 Pfam Leucine rich repeat 154 195 IPR001611 GO:0005515
Mtr6g1046 1233 SMART LRR_sd22_2 473 499 - -
Mtr6g1046 1233 SMART LRR_sd22_2 158 184 - -
Mtr6g1046 1233 SMART LRR_sd22_2 1112 1140 - -
Mtr6g1046 1233 SMART LRR_sd22_2 917 935 - -
Mtr6g1046 1233 SMART LRR_sd22_2 206 232 - -
Mtr6g1046 1233 SMART LRR_sd22_2 550 573 - -
Mtr6g1046 1233 SMART LRR_sd22_2 254 283 - -
Mtr6g1046 1233 SMART LRR_sd22_2 966 992 - -
Mtr6g1046 1233 SMART LRR_sd22_2 1088 1111 - -
Mtr6g1046 1233 Pfam Leucine Rich repeat 393 406 IPR001611 GO:0005515
Mtr6g1046 1233 Pfam Leucine Rich repeat 600 615 IPR001611 GO:0005515
Mtr6g1046 1233 PANTHER BNAC08G45300D PROTEIN 364 512 - -
Mtr6g1046 1233 PANTHER BNAC08G45300D PROTEIN 22 166 - -
Mtr6g1046 1233 PANTHER BNAC08G45300D PROTEIN 526 670 - -
Mtr6g1046 1233 PANTHER BNAC08G45300D PROTEIN 250 362 - -
Mtr6g1046 1233 PANTHER BNAC08G45300D PROTEIN 670 1225 - -
Mtr6g1046 1233 PANTHER BNAC08G45300D PROTEIN 166 250 - -
Mtr6g1046 1233 Pfam Leucine Rich Repeat 208 230 IPR001611 GO:0005515
Mtr6g1046 1233 Gene3D Ribonuclease Inhibitor 473 573 IPR032675 -
Mtr6g1046 1233 Gene3D Ribonuclease Inhibitor 35 198 IPR032675 -
Mtr6g1046 1233 Gene3D Ribonuclease Inhibitor 823 1164 IPR032675 -
Mtr6g1046 1233 PANTHER OS10G0469600 PROTEIN 22 166 - -
Mtr6g1046 1233 PANTHER OS10G0469600 PROTEIN 670 1225 - -
Mtr6g1046 1233 PANTHER OS10G0469600 PROTEIN 166 250 - -
Mtr6g1046 1233 PANTHER OS10G0469600 PROTEIN 250 362 - -
Mtr6g1046 1233 PANTHER OS10G0469600 PROTEIN 526 670 - -
Mtr6g1046 1233 PANTHER OS10G0469600 PROTEIN 364 512 - -
Mtr6g1046 1233 PRINTS Leucine-rich repeat signature 209 222 - -
Mtr6g1046 1233 PRINTS Leucine-rich repeat signature 473 486 - -
Mtr6g1046 1233 Gene3D Ribonuclease Inhibitor 293 415 IPR032675 -
Mtr6g1046 1233 Gene3D Ribonuclease Inhibitor 416 472 IPR032675 -
Mtr6g1046 1233 Gene3D Ribonuclease Inhibitor 199 290 IPR032675 -
Mtr6g1046 1233 SUPERFAMILY L domain-like 845 1156 - -
Mtr6g1046 1233 ProSiteProfiles Leucine-rich repeat profile. 552 574 IPR001611 GO:0005515
Mtr6g1046 1233 ProSiteProfiles Leucine-rich repeat profile. 208 231 IPR001611 GO:0005515
Mtr6g1046 1233 SUPERFAMILY L domain-like 448 816 - -
Mtr6g1046 1233 SUPERFAMILY L domain-like 104 561 - -
Mtr6g1046 1233 SMART LRR_typ_2 158 181 IPR003591 -
Mtr6g1046 1233 SMART LRR_typ_2 206 229 IPR003591 -
Mtr6g1046 1233 SMART LRR_typ_2 942 966 IPR003591 -
Mtr6g1046 1233 SMART LRR_typ_2 230 254 IPR003591 -
Mtr6g1046 1233 SMART LRR_typ_2 1088 1112 IPR003591 -
Mtr6g1046 1233 SMART LRR_typ_2 449 471 IPR003591 -
Mtr6g1046 1233 SMART LRR_typ_2 422 443 IPR003591 -
Mtr6g1046 1233 SMART LRR_typ_2 550 574 IPR003591 -
Mtr6g1046 1233 SMART LRR_typ_2 473 493 IPR003591 -
Mtr6g1046 1233 SMART LRR_typ_2 893 917 IPR003591 -
Mtr6g1046 1233 SMART LRR_typ_2 1040 1064 IPR003591 -
Mtr6g1046 1233 SMART LRR_typ_2 182 205 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1046 Mtr-Chr6 14262716 14266417 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1046 35 911 Miscellaneous Gene Families AT1G74190 27.497 5.71e-50 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1046 - - mtr:MTR_6g038730 1666.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1046 6 14262716 14266417 Mtr6g1046 6 14262716 14266417 ECH