Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0310 ATGTCATCTTCCAAGCAGCAACAACAATTCCGTTGCACTCAAATTCCATCCAAGGTTCTTCACTTCCGCAACCTTCCATGGGAATGCAGCGATGAAGAACTTGCTGATCTTTGTAGTCCGTTTGGAAAAGTGATGAGTACTAAGTGTAATGTTGGTGTTAATCAGAATCAAGCTTTTGTTCAATTCGCGGAACTGAATCAAGCAATTTCAATGGTTTCATATTATGCTTCATCTTCAGAGCCTGCTCAGGTTCGTGGCAAGACTGTTTACATTCAATATTCTAATAGACATCATATTGTCAACAGCAATTCCCCTGGAGATATCCCTGGAAATGTCTTGCTGGTAACCATTGAAGGTGTTGAAGCAGGAGATGTGAGCATTGATGTTATCCACTTGGTGTTTTCTGCGTTTGGCTTTGTACACAAACTTGCCACATTTGAAAAGACTGCAGGTTTTCAGGCTCTGATTCAGTACACTGATGCTGAGACTGCTGCTTCGGCTAAGGATTCACTCGATGGAAGAAGCATACCAAGATACTTGCTCCCAGAGCATGTTGGAGCTTGCAACTTGCGTATCTCGTACTCAGCACATCGAGACCTCAACATCAAATTCCAATCTAACCGCAGCAGGTAG 633 0.4297 MSSSKQQQQFRCTQIPSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQFAELNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHHIVNSNSPGDIPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKLATFEKTAGFQALIQYTDAETAASAKDSLDGRSIPRYLLPEHVGACNLRISYSAHRDLNIKFQSNRSR* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0310 210 CDD RRM1_PTBPH1_PTBPH2 16 96 IPR034792 -
Mtr6g0310 210 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 71 IPR000504 GO:0003723
Mtr6g0310 210 Gene3D - 110 210 IPR012677 -
Mtr6g0310 210 SUPERFAMILY RNA-binding domain, RBD 110 208 IPR035979 GO:0003676
Mtr6g0310 210 CDD RRM2_PTBPH1_PTBPH2 110 204 IPR034793 -
Mtr6g0310 210 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 2 1 210 - -
Mtr6g0310 210 Gene3D - 2 105 IPR012677 -
Mtr6g0310 210 SMART rrm1_1 19 92 IPR000504 GO:0003723
Mtr6g0310 210 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 210 - -
Mtr6g0310 210 SUPERFAMILY RNA-binding domain, RBD 6 107 IPR035979 GO:0003676
Mtr6g0310 210 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0310 Mtr-Chr6 3784046 3786643 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0310 K14948 - gmx:100788927 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0310 6 3784046 3786643 Mtr6g0310 6 3784046 3786643 ECH
Mtr6g0310 6 3784046 3786643 Mtr1g3637 1 48002007 48008637 PCT