Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3548 ATGAAGAAGCAACAACTAGCACCACTTGTTCTATTTTCCCTCACACTTATACTATCACTCATTCATTCCACCACCGCCGCTGCCGCCACCTCCGGCAACCATAACATCACCCGCATTCTAGCCAAACACCCTGGCTTCTCCACCTTCAACCACTACCTCACCATAACCCACCTCGCCGACGAAATCAACCGCCGTCAAACCATAACCATCCTAGCCATAGACAATGCCGCCATGTCCTCCCTCCTAGACAAACACCTCTCCATCACCACCCTCAAAAATGTCCTCTCCCTCCATGTTTTAGTCGACTACTTCGGCGCCAAGAAACTCCACCAAATCACCGACGGCACCACACTTGTCTCCTCCATGTTCCAAGCCACTGGATCCGCCGCTGGAACCGCCGGTTACGTGAATATCACAAACCTAAAAGGTGGCAAAGTCGGTTTTGGTGCCGAAGACAACGACGGTCTGCATTCCTACTACGTAAAATCCGTAGAAGAACTTCCATATGTCATCTCCGTTCTCCAAATCAGTAATCCTTTAAGCTCCGCCGACGCAGAAGCGCCGACGGCAGCTCCAAGTGACATTGATTTAATCGGAATTATGTCAAAACAAGGTTGTCAGTCTTTCGCAGATTTGTTACGTGTTTCAAAAGCACTCCCTACTTTCAAAGAATCCGTTGACGGCGGTTTAACTGTTTTCTGTCCAACAGATACCGCCGTCAGCGGTTTCTCTGCAAAGTACAAAAACCTAACAGACTCTCAAAAGGTTTCCCTCCTTTTATACCACGGAGTTCCAGTTTACCAATCATTACAGATGTTGAAATCAAACAATGGTGTAATGAACACATTAGCAACAGAAGGCCATAACAAATATGATTTCACAGTCCAAAATGATGGTGAAGATGTTAACCTTGAAACCAAAGTTAACACTGCAAATATTGTTGGTACATTAATAGATCAAGATCCTTTTGTAGTGTATAAGATAAGTAAGGTTTTGATGCCAAGAGAATTGTTTAAGGGAGTTAAGGAGGAGAAAGATTTAGCACCAGCTGAATCACCAAAAGCAGCAAAGAGTAAAGCCAAGAAGAAGAAGGCGGCGCCGGCGGCGGATGAGGATGCAGACTCACCGGCAGATGGACCAGATGCAGATGCAGATTCTGATGATCAGAAAGCTGCTGATAATGAAAATGGAGTTAATGGATTAAATCAAGGGTTGAGATTCATTATGGTATTTTTCAGTTTGTTTATTGGTGCTTTGGTTCTATAA 1266 0.4479 MKKQQLAPLVLFSLTLILSLIHSTTAAAATSGNHNITRILAKHPGFSTFNHYLTITHLADEINRRQTITILAIDNAAMSSLLDKHLSITTLKNVLSLHVLVDYFGAKKLHQITDGTTLVSSMFQATGSAAGTAGYVNITNLKGGKVGFGAEDNDGLHSYYVKSVEELPYVISVLQISNPLSSADAEAPTAAPSDIDLIGIMSKQGCQSFADLLRVSKALPTFKESVDGGLTVFCPTDTAVSGFSAKYKNLTDSQKVSLLLYHGVPVYQSLQMLKSNNGVMNTLATEGHNKYDFTVQNDGEDVNLETKVNTANIVGTLIDQDPFVVYKISKVLMPRELFKGVKEEKDLAPAESPKAAKSKAKKKKAAPAADEDADSPADGPDADADSDDQKAADNENGVNGLNQGLRFIMVFFSLFIGALVL* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3548 421 MobiDBLite consensus disorder prediction 344 396 - -
Mtr5g3548 421 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 417 IPR033254 -
Mtr5g3548 421 Pfam Fasciclin domain 206 334 IPR000782 -
Mtr5g3548 421 Pfam Fasciclin domain 45 121 IPR000782 -
Mtr5g3548 421 SUPERFAMILY FAS1 domain 39 152 IPR036378 -
Mtr5g3548 421 ProSiteProfiles FAS1/BIgH3 domain profile. 193 332 IPR000782 -
Mtr5g3548 421 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 2 13 417 - -
Mtr5g3548 421 SUPERFAMILY FAS1 domain 190 335 IPR036378 -
Mtr5g3548 421 SMART fasc_3 231 335 IPR000782 -
Mtr5g3548 421 SMART fasc_3 69 183 IPR000782 -
Mtr5g3548 421 Gene3D FAS1 domain 199 334 IPR036378 -
Mtr5g3548 421 Gene3D FAS1 domain 33 166 IPR036378 -
Mtr5g3548 421 ProSiteProfiles FAS1/BIgH3 domain profile. 33 199 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3548 Mtr-Chr5 44283534 44285273 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3548 - - gmx:100799605 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3548 5 44283534 44285273 Mtr5g3548 5 44283534 44285273 ECH