Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3328 ATGGCGGAGAACGAACCCGCGAAGCCTTTGTTACCATACCTTCAACGCGCCGATGAATTACAGAAACACGAACCTCTCGTTTCTTATTACTGTCGATTATATGCGATGGAAAGAGGATTGAGGATTCCACAAAGTGATCGCACCAAAACTACTAATGCTCTTCTTGTTTCTCTCATGAAACAGCTTGAAAAGGATAAAAAGGGACTCAAGTTGGGGCCTGAAGATAATTTATATCTTGAGGGATTTGCTTTGAATGTGTTTGGGAAAGCAGACAAGCAAGATCGTGCTGGAAGAGCAGATGTGAATACAGCAAAAACATTTTACGCTGCTAGCATCTTTTTTGAGATTCTTAATCAATTTGGTGAACTTCAGCCTGATCTGGAGCAGAAACAGAAATATGCAGTATGGAAAGCAGCTGATATAAGAAAGGCTTTGAAAGAAGGAAGGAAGCCTGTGGCTGGCCCACCTGCTGGTGACGAGGACCTGTCCGTTCTGTCGAGCTCTCCTAGTAATATATATGATATTGGGACTACTGAAACTTCTGCTTCTGGTGCTGGGTCAGAATCCGATTCAACACATGGTTATCATAACCCTGTCAACTACCAGAATCTGCCAAGCATTCCTCCTGCACCTAAATTCAACGACACTCTTAATGATCAAAATTCTGCAAACATTCCACCATCTTTGCAGTTTCATGATAGGGTAAATGATAATAAGCATTCTTCCATTGTTTCTCCATCATCTCACTCTTATACACCTGGAGTTTATCCTTCCCAAGACTACCATCCTCCTCCATCTTCCCAGGATTATCATCACCCACCACCTTCCCAAGAATACCATCCTCCTCCACCTTCCCAAGATTACCATCCTCCGCCACCTTCCCAGGATTATCCTCCTCCACCTTCCCAGGATTACCATCCTCCTCCACCTTCTCAAGATTATCAACCCCCTCCACCTTCCCAAGATTACCATCAGCCTCCACCTGCAAGATCAGACAGTTCTTATTCCGAGCCCTACAACCACCAACAATACTCACCAGATCAGTCACAGAATTTAGGTCCCAATTACCCTTCTCACGAAACTCCCCCTCCTTACTCTCTTCCCCATTTTCAATCTTATCCAAGTTTTACAGAAAGCAGCCTACCGTCGGTACCAGTAAACCACACTTATTATCAAGGGCCCGATGCTTCATATTCTTCCCAGTCAGCTCCTCTGACTACAAACCATTCATTAAATACCCAAAACAGTTCCAGCAGCAGAAATGGTACTGTCCCAGAACCCAAGCCAACAACTCCGACATACCAGTATGACAGTAGCTACCAGCCACCACCTGAAAGAATAGCAGAGGCACACAAAGCTGCAAGATTTGCCGTTGGGGCACTGGCATTCGATGATGTCTCAATTGCAGTAGACTACTTGAAGAAATCACTAGAGTTGCTAACAAACCCATCAGTTGGCCAGTAA 1464 0.4467 MAENEPAKPLLPYLQRADELQKHEPLVSYYCRLYAMERGLRIPQSDRTKTTNALLVSLMKQLEKDKKGLKLGPEDNLYLEGFALNVFGKADKQDRAGRADVNTAKTFYAASIFFEILNQFGELQPDLEQKQKYAVWKAADIRKALKEGRKPVAGPPAGDEDLSVLSSSPSNIYDIGTTETSASGAGSESDSTHGYHNPVNYQNLPSIPPAPKFNDTLNDQNSANIPPSLQFHDRVNDNKHSSIVSPSSHSYTPGVYPSQDYHPPPSSQDYHHPPPSQEYHPPPPSQDYHPPPPSQDYPPPPSQDYHPPPPSQDYQPPPPSQDYHQPPPARSDSSYSEPYNHQQYSPDQSQNLGPNYPSHETPPPYSLPHFQSYPSFTESSLPSVPVNHTYYQGPDASYSSQSAPLTTNHSLNTQNSSSSRNGTVPEPKPTTPTYQYDSSYQPPPERIAEAHKAARFAVGALAFDDVSIAVDYLKKSLELLTNPSVGQ* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3328 487 MobiDBLite consensus disorder prediction 163 231 - -
Mtr5g3328 487 MobiDBLite consensus disorder prediction 267 325 - -
Mtr5g3328 487 MobiDBLite consensus disorder prediction 326 356 - -
Mtr5g3328 487 MobiDBLite consensus disorder prediction 240 265 - -
Mtr5g3328 487 Pfam Vta1 C-terminal domain 444 481 IPR041212 -
Mtr5g3328 487 MobiDBLite consensus disorder prediction 370 440 - -
Mtr5g3328 487 Pfam Vta1 like 11 147 IPR039431 -
Mtr5g3328 487 MobiDBLite consensus disorder prediction 147 447 - -
Mtr5g3328 487 Gene3D Immunoglobulin FC, subunit C 444 482 - -
Mtr5g3328 487 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 294 484 IPR044538 GO:0032511
Mtr5g3328 487 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 1 312 IPR044538 GO:0032511
Mtr5g3328 487 Gene3D - 4 151 IPR023175 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3328 10 128 Glycosyltransferase AT1G05570 25.581 2.86e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3328 K12199 - gmx:100806599 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3328 5 42177916 42181294 Mtr5g3328 5 42177916 42181294 ECH