Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3325 ATGAATCTGGATTATATTCATTATCCGACCAAGAGTAACTCTGTTTCAGCTAAAGTTGATTTTGCTGCCATGGAGCTCTGTACTCGAACCTTCACAACTACTTCTCTTCCTTTCAACCCTTCTTTCTCTCTTCCTTCTTCTTCTTCTTCTTCTTCTTCAATTTCTCTTCATCTTCATTCCAATACTACTCTTAAACCCTTCAAATTCAATCTCTCATCTTCTTTCATTCAACCATCTCTTTATCATCACACTTCTTCTCCCTTCACTGTCTCAGCTTCTTCTTCTTCTTCAGTTGAACTTTTCCCAGAAAATGACCGTCTTCCTGCTCAATTGAAGGTCACTGAAACAAAGGAATCCAATTCCAGAGTTACATTGCATGTGGAGGTTCCATCACTTGTATGCGAGGACTGTTATGAAAGGGTCCTAGTTGAGTTTACAAAGTTCGCCAAGGTACCTGGATTTCGTCCTGGAAAAAAGATCCCGGAAAGTATTCTTGTTGGTTATGTGGGGAGTAAAAATGTTCAAAAGGCTACGATCGAATCAATATTGAGGAGGACACTTTCACACGCTGTAACAGCAGTTACTGGAAGGGCTTTGCAGGATTCTATACGTATAGTTACTAAATTTTCTGATATGGAGGATACCTATTCTTCTCTCGGATATCTTAGATATGATGTGAGTGTTGATGTTGCACCAGAAATCAAATGGATTTCTGATGATGCATACAAAAACTTGAAGGTTGTTGTTGAGATAGACAATGAAATAGATGCTCACATAGCATCTGAAAAAGAATTTAGACGGCGTTACAAGTCAGCCGGTGTACTGAAAGTTGTTACTGATAGAGGACTACAGGTCGGTGATGTTGTTGTACTTGACATCTCAGCAACGACCGTTGATCAAGAATCAAATATCAAAAATATTCCTTCTGCTGAAAGTAAAGGATTCAATTTTGATACAGAGGATAGTGAAATATTAGTACCAGGTTTCCTTGATTCTATAATTGGAATTGGTCGAGGCGAAACAAAGTCATTCCCCCTTGTTTTTCCTGAAACATGGAAGCAGGAAAATCTCCAAGGTGTTCATGCTCAGTTTACTGTTGAGTGCAAAGAACTTTTTTACAGAGATTTACCAGAGCTAGATGATTCTATTGCTGATAAGCTTATCCCTGGATGTACCACAGTGCAACAGGTCAAAGACTTATTGTTAGAAAGATTCCAAGAGATAGAGCAAACAGCTAGGGAACAAGCAACTGATAATGCTATATTAGATCAGATTTCTAAGATGGTGGAAGTTGATATACCTCAATCCTTGTTTGATGAACAAGGTAGACAGCTATATGGATCCAGCCTATTAGAAATGCAGACAAAAATAAAACTAAGTGAGCAGCAGCTGGCTACTCTATCAAGTCCAAAGGCCGTGAATGAATATCTTGAGCATCATAGGGAAAATATTACAAATTTGATCAAACAGAACCTGGCAGTTGGTGACATATATAAGCGTGAAAATATGCAGCTTCCTACTGAAGACATCGTCAAAGAGGTTGAGAATTCCATTGCTGAATTCAAACGTCAAAAACAAGAATACGACGAGGAACGTGTAAAGGAACAGGTTCAAGAAATACTAGAAGGAGCTAAGGTGCTAGAGTGGTTGAGAGAACATGCAGAAGTTCAGTATATAACAATATGA 1686 0.3855 MNLDYIHYPTKSNSVSAKVDFAAMELCTRTFTTTSLPFNPSFSLPSSSSSSSSISLHLHSNTTLKPFKFNLSSSFIQPSLYHHTSSPFTVSASSSSSVELFPENDRLPAQLKVTETKESNSRVTLHVEVPSLVCEDCYERVLVEFTKFAKVPGFRPGKKIPESILVGYVGSKNVQKATIESILRRTLSHAVTAVTGRALQDSIRIVTKFSDMEDTYSSLGYLRYDVSVDVAPEIKWISDDAYKNLKVVVEIDNEIDAHIASEKEFRRRYKSAGVLKVVTDRGLQVGDVVVLDISATTVDQESNIKNIPSAESKGFNFDTEDSEILVPGFLDSIIGIGRGETKSFPLVFPETWKQENLQGVHAQFTVECKELFYRDLPELDDSIADKLIPGCTTVQQVKDLLLERFQEIEQTAREQATDNAILDQISKMVEVDIPQSLFDEQGRQLYGSSLLEMQTKIKLSEQQLATLSSPKAVNEYLEHHRENITNLIKQNLAVGDIYKRENMQLPTEDIVKEVENSIAEFKRQKQEYDEERVKEQVQEILEGAKVLEWLREHAEVQYITI* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3325 561 Coils Coil 511 538 - -
Mtr5g3325 561 SUPERFAMILY FKBP-like 275 380 - -
Mtr5g3325 561 Hamap Trigger factor [tig]. 111 557 IPR005215 GO:0015031
Mtr5g3325 561 SUPERFAMILY Trigger factor ribosome-binding domain 111 244 IPR036611 GO:0006457|GO:0015031
Mtr5g3325 561 Pfam Bacterial trigger factor protein (TF) 112 256 IPR008881 GO:0006457|GO:0015031
Mtr5g3325 561 Gene3D - 271 377 IPR046357 GO:0003755
Mtr5g3325 561 Pfam Bacterial trigger factor protein (TF) C-terminus 393 550 IPR008880 GO:0006457|GO:0015031
Mtr5g3325 561 SUPERFAMILY Triger factor/SurA peptide-binding domain-like 379 558 IPR027304 -
Mtr5g3325 561 PANTHER TRIGGER FACTOR-LIKE PROTEIN TIG, CHLOROPLASTIC 95 560 - -
Mtr5g3325 561 Gene3D - 109 234 IPR036611 GO:0006457|GO:0015031
Mtr5g3325 561 Gene3D - 241 556 IPR037041 GO:0006457|GO:0015031
Mtr5g3325 561 PANTHER TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE 95 560 IPR005215 GO:0015031
Mtr5g3325 561 TIGRFAM tig: trigger factor 122 550 IPR005215 GO:0015031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3325 K03545 - gmx:100812597 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3325 5 42150567 42155663 Mtr5g3325 5 42150567 42155663 ECH