Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3320 ATGTTCTTCCATAAGCTTTTCTCCCGTGTTCCAGTTACCATTTCCGGAACCTCGATTCTCTCAGCTCCGCGAATCCCTCAACAACACTTCCACAACTTCTCCAATCAATTACATTCCCTCATCATTCCTCATTCTACCAACAAGCTATTTCCAGTTCAAGTCAATTTCTTATGTCCATCTATAAATTCATCAACTTCAAAATTTGGATTTTCTTCATCAGCCTCAGTTGAAACAGAAGGGAAAGAAGGGAATAATGTGCATAATGGCAATTTCACAAGTGCTGACCCTGCAAAAACAAGTGAAGAAGCAGAGGAAATTGATCAGCCTGGACAAGCCAAGTCTGCAGATCAAACAGAAGAATCAGGTTCTATTTCAGCAGATTCACATTCTCAAACTGTCAAAAGGAGGAGGAGGAGTATTAAACGAACTGCTTTTTCTGATTCAGATTCAGATAGTGAATCGGATCTATCCAGGGATGATTTGATTAAGCTTGTAGCTGAGAAGGAAGAACTTTTGAAACTAAAGAAAAAAGAGATTGAGAAAATGCAAGATAAAGTTCTCCGTACTTACGCTGAAATGGAGAATGTCATGGACAGGACTAGACGTGAAGCAGAGAATTCAAGGAAATTCGCTATACAGAATTTCGCAAAGAGTTTACTTGATGTTGCGGATAATTTGGGAAGAGCTTCATCAGTTGTAAAAGAAAGTTTTTCCAAAATTGATACGTCAAGTGACTCCTCCGCTGAAGCGGTGAAACTCCTGAAGACACTTCTGGAAGGTGTTGAAATGACTGAGAAACAACTTTCAGAGGCACTTAAAAAGTTTGGTGTAGAAAAATTTGACCCTACAAATGAGCCCTTTGATCCACATAGGCATAACGCAGTCTTCAAAGTTCCTGACGGTTCCAAGCCCCCAGGCACTGTTGCAGCTGTGCTGAAGGCAGGATATTTGCTTCATGATCGTGTTATTCGGCCAGCGGAAGTTGGTGTAACCCAAGCAAAAGAAAATGGCAATTCAGCTGAATGA 1026 0.4074 MFFHKLFSRVPVTISGTSILSAPRIPQQHFHNFSNQLHSLIIPHSTNKLFPVQVNFLCPSINSSTSKFGFSSSASVETEGKEGNNVHNGNFTSADPAKTSEEAEEIDQPGQAKSADQTEESGSISADSHSQTVKRRRRSIKRTAFSDSDSDSESDLSRDDLIKLVAEKEELLKLKKKEIEKMQDKVLRTYAEMENVMDRTRREAENSRKFAIQNFAKSLLDVADNLGRASSVVKESFSKIDTSSDSSAEAVKLLKTLLEGVEMTEKQLSEALKKFGVEKFDPTNEPFDPHRHNAVFKVPDGSKPPGTVAAVLKAGYLLHDRVIRPAEVGVTQAKENGNSAE* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3320 341 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 166 276 IPR013805 -
Mtr5g3320 341 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 277 333 IPR009012 GO:0006457
Mtr5g3320 341 MobiDBLite consensus disorder prediction 111 129 - -
Mtr5g3320 341 Gene3D - 160 275 IPR013805 -
Mtr5g3320 341 MobiDBLite consensus disorder prediction 142 157 - -
Mtr5g3320 341 Coils Coil 158 185 - -
Mtr5g3320 341 PANTHER GRPE PROTEIN HOMOLOG 15 108 - -
Mtr5g3320 341 PANTHER GRPE PROTEIN HOMOLOG 127 333 - -
Mtr5g3320 341 Pfam GrpE 165 331 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mtr5g3320 341 ProSitePatterns grpE protein signature. 287 330 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mtr5g3320 341 Gene3D Head domain of nucleotide exchange factor GrpE 276 332 IPR009012 GO:0006457
Mtr5g3320 341 MobiDBLite consensus disorder prediction 77 97 - -
Mtr5g3320 341 MobiDBLite consensus disorder prediction 77 157 - -
Mtr5g3320 341 CDD GrpE 182 330 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mtr5g3320 341 Hamap Protein GrpE [grpE]. 101 332 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mtr5g3320 341 PANTHER GRPE PROTEIN 15 108 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mtr5g3320 341 PANTHER GRPE PROTEIN 127 333 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mtr5g3320 341 PRINTS GrpE protein signature 187 203 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mtr5g3320 341 PRINTS GrpE protein signature 215 230 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mtr5g3320 341 PRINTS GrpE protein signature 311 330 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3320 Mtr-Chr5 42125960 42131647 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3320 K03687 - gmx:100803396 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3320 5 42125960 42131647 Mtr5g3320 5 42125960 42131647 ECH