Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3319 ATGGAGTTCGATCCGATCCCAATCGGTTCGTGCTCCAAAGATCACCAAAACATTTATCAACAATGGTTCAATCACGCTGATTCAGATGGTGATGGTCGCATAACGGGAAATGATGCCACAAAGTTTTTCGCCATGTCTAATTTGTCTCGTCAACATCTTAAACAGGTGTGGGCTATTGCAGATTCAAAGCGACAAGGTTATCTAGGTTTCCAAGAGTTTATCATTGCTATGCAGCTAGTTTCTTTGGCACAATCTGGGCACCCAATAACACATGATCTGCTGAATAGTGATGTTGATTTGAAAAATCTGAAACCTCCCATATTGGAAGGTTTGGATGCATTACTAGCTAAAAAAAAGCATAAACAAAGCGAACTGGATGTAAATGGTAGTTCTCAATTACAGCCATCACCATCAAGTAGTTGGTTTTCTTCGAAGTCCACAAAAAAGGTGCCACTTTCCTCCGTGACATCAATAATTGATGGCTTGAAGAGACTCTACATTCAGAAGTTGAAGCCTTTAGAAGTTACTTACCGCTTTAATGATTTTGTCTCCCCATTATTGACAAATAGTGATTTTGATGCCAAACCTATGGTTATGCTTTTGGGTCAATACTCAACTGGTAAAACAACATTTATCAAACATCTGCTTAAATGTAGCTATCCAGGTGCACATATTGGACCTGAGCCTACAACTGATAGGTTTGTTGTTGTCATGTCTGGACCTGACGAGAGAAGCATTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCGTTTAGTGGACTTACAACTTTTGGCACAGCTTTTTTGTCAAAATTTGAGTGTTCACAAATGCCTCATCCTCTACTGGAGCACATTACATTTGTGGACAGTCCTGGAGTTTTATCTGGAGAAAAACAACGAACACAACGAGCATATGATTTTACGGGTGTAACATCATGGTTTGCTGCTAAGTGTGATTTGATACTCCTACTGTTTGATCCTCACAAGCTTGATATTAGCGATGAGTTCAATCGCGTGATATCATCCTTACGGGGACATGATGACAAAATTCGAGTGGTTTTGAACAAGGCAGATCAAGTTGATACTCAGCAACTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTCGGGAAGGTACTGAACACACCTGAAGTCACTCGTGTGTATATTGGCTCCTTTAACGACAAGCCTGTAAATGATGCTGTCAGTGGTCCAATTGGAAAGGAACTGTTTGAAAAAGAACAGGAAGACCTTCTTTCAGATCTTAAAGATATACCAAAGGCGGCTTGTGATCGAAGAATCAATGAATTTGTAAAACGAGCCCGGGCAGCCAAGATACATGCTTACATTATCAGTCATCTTAAAAAGGAGATGCCTGCAATGATGGGAAAAGCTAAAGCTCAGCAAAAACTAATTGATAATTTGGCAGGTGAATTTGGAAAGGTACAAAGGGAGTTCCATTTACCTCCTGGTGACTTTCCAAATGTTGAGCATTTCAGAGAGAGCTTGAGTGGTTACAACATTGACAAGTTTGAGAAATTGAAGCCGAAAATGTTACAAGTAGTTGATGACATGCTTGCCTATGACATTCCTAACCTCTTAAAGAATTTTAAGAATCCCTATGATTAA 1632 0.4007 MEFDPIPIGSCSKDHQNIYQQWFNHADSDGDGRITGNDATKFFAMSNLSRQHLKQVWAIADSKRQGYLGFQEFIIAMQLVSLAQSGHPITHDLLNSDVDLKNLKPPILEGLDALLAKKKHKQSELDVNGSSQLQPSPSSSWFSSKSTKKVPLSSVTSIIDGLKRLYIQKLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLKCSYPGAHIGPEPTTDRFVVVMSGPDERSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHPLLEHITFVDSPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFNRVISSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVTRVYIGSFNDKPVNDAVSGPIGKELFEKEQEDLLSDLKDIPKAACDRRINEFVKRARAAKIHAYIISHLKKEMPAMMGKAKAQQKLIDNLAGEFGKVQREFHLPPGDFPNVEHFRESLSGYNIDKFEKLKPKMLQVVDDMLAYDIPNLLKNFKNPYD* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3319 543 Pfam Dynamin family 198 357 IPR045063 -
Mtr5g3319 543 ProSiteProfiles EH domain profile. 15 93 IPR000261 GO:0005515
Mtr5g3319 543 Pfam Domain of unknown function (DUF5600) 433 534 IPR040990 -
Mtr5g3319 543 PANTHER CALCIUM-BINDING EF HAND PROTEIN 19 541 - -
Mtr5g3319 543 SMART eh_3 8 103 IPR000261 GO:0005515
Mtr5g3319 543 ProSiteProfiles EF-hand calcium-binding domain profile. 14 49 IPR002048 GO:0005509
Mtr5g3319 543 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 192 428 IPR030381 GO:0005525
Mtr5g3319 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 465 IPR027417 -
Mtr5g3319 543 SMART efh_1 52 80 IPR002048 GO:0005509
Mtr5g3319 543 SMART efh_1 18 46 IPR002048 GO:0005509
Mtr5g3319 543 Gene3D - 10 107 - -
Mtr5g3319 543 Gene3D - 198 426 IPR027417 -
Mtr5g3319 543 CDD EHD 197 441 - -
Mtr5g3319 543 MobiDBLite consensus disorder prediction 125 145 - -
Mtr5g3319 543 Pfam Cytoskeletal-regulatory complex EF hand 19 80 IPR000261 GO:0005515
Mtr5g3319 543 Gene3D - 162 534 - -
Mtr5g3319 543 CDD EH 19 85 IPR000261 GO:0005515
Mtr5g3319 543 MobiDBLite consensus disorder prediction 126 145 - -
Mtr5g3319 543 Pfam N-terminal EH-domain containing protein 161 193 IPR031692 -
Mtr5g3319 543 PANTHER EH DOMAIN 19 541 - -
Mtr5g3319 543 SUPERFAMILY EF-hand 12 98 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3319 Mtr-Chr5 42106574 42112289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3319 1 543 EF-hand Containing Proteins AT3G20290 84.404 0.0 938
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3319 K12483 - gmx:100804468 990.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3319 5 42106574 42112289 Mtr5g3319 5 42106574 42112289 ECH