Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3317 ATGAAGACAAGCAAAGTTGAAAAGAATACATGGTCTTTGACACTATGCTTTGTCTTACTTTCTCTCATTACAATCTTTCTTCCTTTTTGTGAATCCTTCAACTACGGCCAAGCCTTGTCACAAACCCTTCTCTATTTTGAGGCACAACGTTCAGGTCACTTACCCCACAATCAAAGGGTCAATTGGCGTCACCATTCTGGTCTCACTGATGGCCTAGAACAAGGGGTGGATTTGGTGGGAGGCTACTATGATGCAGGGGACAACGTGAAATTTGGGCTACCGATGGCATTCACCGTAACTCTCCTTTCTTGGGCTGCTATAGAGTACGGCGAAGAAATCGCCGCAGCCGGAGAATATGTCCATGCAATGGAGGCTATCAAGTGGGGGACTGACTATTTCATCAAGGCTCACACACAACCAAATGTTCTATGGGTAGAGGTTGGGGATGGAGAGACTGATCATTATTGTTGGCAGCGGCCGGAGGACATGACAACGCCACGAAGAGCATATAAAGTTGATGAAAACAACCCCGGCTCAGAAGTCGCTGGCGAGACGGCCGCAGCTTTGGCAGCTGCGTCTATTTTGTTTAAGAAAACAAATCCACATTACTCTCATCTACTTTTGCAACATGCACAACAGTTGTTTGAGTTTGGTGACAAGTTCAAGGGCAAGTATGATGAGAGTGTTGAAGTGGCTAAAGGTTACTATACTTCAGTTAGTGGGTACATGGATGAGTTGCTATGGGCAGCAATTTGGTTATATAAGGCCACAGAAAAGGATGAATATTTGAAGTATGTTTTGGAGAATGCTAATGATTTTGGTGGGACCACTTGGGCTATGACAGAATTTAGCTGGGATGTTAAATATTCAGGTGTTCAAGCCATTGCTTCAATGCTCCTAATGGAAGAAAAACACAAGAAACATGAAGTGATACTCAAACAATATCGTTCAAAAGCAGAACATTATTTTTGTGCATGTCTTAATCTCAACAATGCAAGTAAAGATAACGTGGATCGCACCCCAGGAGGTTTACTATACATCCGCCAATGGAACAATATGCAATATGTTGCAAATGCAGCATTTCTTCTGGCCATTTATTCTGATCACCTCTTAGCTACAAATCAAAAATTGCATTGCCAAAAAGGTGAGGTGGGTCCCAATGAACTCTTAGCCTTTGCAAAATCACAAGTTGATTACATCTTGGGTTCTAATCCAATGGGTATGAGCTATCTGGTTGGTTATGGTTCAAATTTTCCTCAAAGGGTGCACCATAGGGGTGCATCCACTGAATCATACAAAGGGAACATGGGTTTTATTGGGTGCACTCAAGGCTATGATAATTGGTATGAAAGTCCTAAGCCTAACCCTAATATTCTCATCGGTGCCCTTGTTGGTGGACCTGATAATAAGGACCAATTTAGAGATGAAAGAAGAAATTTTGAACAGTTGGAGGCTTGTACCTACAATACTGCTGCACTTGTAGGAGTTTTTGCTAGATTGTATAATTTAGAATAA 1515 0.4211 MKTSKVEKNTWSLTLCFVLLSLITIFLPFCESFNYGQALSQTLLYFEAQRSGHLPHNQRVNWRHHSGLTDGLEQGVDLVGGYYDAGDNVKFGLPMAFTVTLLSWAAIEYGEEIAAAGEYVHAMEAIKWGTDYFIKAHTQPNVLWVEVGDGETDHYCWQRPEDMTTPRRAYKVDENNPGSEVAGETAAALAAASILFKKTNPHYSHLLLQHAQQLFEFGDKFKGKYDESVEVAKGYYTSVSGYMDELLWAAIWLYKATEKDEYLKYVLENANDFGGTTWAMTEFSWDVKYSGVQAIASMLLMEEKHKKHEVILKQYRSKAEHYFCACLNLNNASKDNVDRTPGGLLYIRQWNNMQYVANAAFLLAIYSDHLLATNQKLHCQKGEVGPNELLAFAKSQVDYILGSNPMGMSYLVGYGSNFPQRVHHRGASTESYKGNMGFIGCTQGYDNWYESPKPNPNILIGALVGGPDNKDQFRDERRNFEQLEACTYNTAALVGVFARLYNLE* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3317 504 PANTHER ENDOGLUCANASE 8 502 - -
Mtr5g3317 504 Gene3D - 31 504 IPR012341 GO:0005975
Mtr5g3317 504 SUPERFAMILY Six-hairpin glycosidases 32 502 IPR008928 GO:0005975
Mtr5g3317 504 Pfam Glycosyl hydrolase family 9 35 496 IPR001701 GO:0004553|GO:0005975
Mtr5g3317 504 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 399 425 IPR018221 -
Mtr5g3317 504 PANTHER ENDO-1,4-BETA-GLUCANASE 8 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3317 Mtr-Chr5 42054981 42058714 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3317 17 499 Glycoside Hydrolase AT2G32990 69.715 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3317 - - gmx:100802346 861.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3317 5 42054981 42058714 Mtr5g3317 5 42054981 42058714 ECH