Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3299 ATGGAGGATATGGATGATGAGATGATCGATGAGGTTCCTCAGGTTTACATGGCCTGCATACAAAATGGTCATAGAATAGGAGTTTCTTATTATGATTCCAGCCTTCGACAACTTAATGTGCTTGAAGCTTGGGATGATGGGGACAATGGTTTTTCAGTTATTGATCTCGTGAAATATCAAGCAAACCCTCTGGTCATATACACAAGCACTAAATCAGAAGAATCATTTTTGGCTGCTCTGCAACAAAGTGATGAAGTAGCTGAGGCTCCTACGGTGAAGCTTGTGAAAAGTTCAATATTCAGCTATGAGCAAGCATGGCACAGATTAATTTACCTTCGGGTGGCGGGAATGGATGATGGATTAGATGTCAAGGAAAGGATTTACTTTTTGAGTTCCATGATGGACATGGGAAGTGAAGTACAAGTTCGTGCTAGTGGTGGCCTTCTTGCAATATTAGAGAATGAAAGGATTGTAGATACTCTTGAGCAAAAAGAATCTGGAAATACATCAATTACAATAGATTCTTTAGCAGAAATTTCACTAAATAACTTTATCAAACTTGACGCAGCATCTCATGAAGCATTACAAATATTCCAGATAGACAAGCACCCAAGCCACATGGGAATTGGTAGAGCAAAAGAAGGGTTCTCTGTATTTGGAATGATGAATAAGTGTGTCACTCCAATGGGTAGACGTCTTTTAAGACAGTGGTTCTTGAGGCCCATACTTGATCTTGAAGTTCTAAACTACCGTTTGAATTCTATATCTTTCTTTCATAGCTCAGAAGAACTTGTTGCTTCTTTACGTGAAACCCTGAAATCTGTGAAGGATATTCCCCACTTGCTGAAGAAATTTGACTCTCCAAGCTCCATATGCACTAGCACTGATTGGGCAGCACTTCTGAAGAGTATCAGTGCACTTCTGCATGTAAACAAGATATTTGAAGTTGGAATTTCCGAAGGTCTTCAAGAAGAATTGAAGTACTTGAACTTGGATATTGTTGAGATGGCAAGTTCATGCATAACAACGGAGCTTGCATATGTCTATGAGCTGATAATTGGGGTTATTGATGTAAACAGAACTAAAGAGAAGGGATATCCGACAGTGGTGAAAGAAGGTTTCTGTGATGAGTTGGATGAGCTAAGGCAAATATATGAGGAATTGCCAGAATTCCTGGAAGAGGTTTCATCGTTGGAACTTGCACAACTCCCTGATCTATGCAAGAACAAGCTTGTTCCCTGTATTGTTTATATACAGCAAATAGGATATTTAATGTGCATCTTTGAAGAAAAACTTGAAGAAGCCACTCTCGAGAAACTTATAGAATGGGAATACACTTTTGGTGATGCAGATGGAGAGACGAAAAGATACTTTTATCGTATGCCAAAGACACGGGAATTAGACAATCTTCTAGGAGATATCTATCATAAAATTCTAGATATGGAGAGGGCGATCACCAGAGATTTGTTTTCGCATGTATCATTGTTCTCAACCCATTTGACAAAGGTGGCAACTTTTGCGGCTGAACTGGACTGTTTTTTGTCGATGGCTTTGGTTGCTCGACAGAACAACTATGTCAGACCTGTATTGACCGAAGAAAACTTGCTCGATATAAAAAATGGAAGGCATGTTTTACAGGAAATGACTGTAGACACGTTTATTCCTAACGATACTAAGATTTTTCATGATGGAAGAGTTAACATCATTACTGGTCCTAACTTTTCTGGGAAGAGTATCTATATAAAACAGGTGGCTATTATTGTTTTCCTGGCCCACATTGGTAGTTTTGTGCCAGCTGATGCAGCAACTGTTGGGCTGACAGATAGAATATTTTGTGCGACAGGAAGCAGGCTTATGACAGCAGAACAATCAACGTTTATGATTGATCTACATCAAATTGGGATGATGCTGAGGCATGCTACTTCACGATCTTTGTGTCTGGTGGATGAATTTGGTAAAGGTACTCTTACAGAAGATGGCATTGGTCTGCTTGCCGGGGCCATAAATCACTTCATCACGTGTGATGAACCTCCAAAGGTTTTCGTGTGCACTCATCTGATGGATTTATTGCACGGGTGTTCTTTGACCAAGTCTGAGCAAATTAAGTTCTACACAATGAGTATACTGAGGCCTGAAGACGATTCAACTCATATCGAAGATATTGTTTTTTTATATAGGCTTGTCCCTGGGCATGTGCATCATAGCTATGGGCTGCACTGTGCACTACTTGCAGGCGTGCCAGACGAAATTATAAAAAGAGCAGCAGTTGTGTTGGACGCTGTTTCAAAAAACAATTGTGTTGAGAGGTTATGCAATGAGAACATCTCAGCTCAAGATGATGAATACAAGGACGCTATGGAGAAATTGTTGAAATTCGATGTTGACAATGGTGACTTGAACCTTTTTTTCGAGGATATATTCTGCAATTCCTGA 2433 0.3983 MEDMDDEMIDEVPQVYMACIQNGHRIGVSYYDSSLRQLNVLEAWDDGDNGFSVIDLVKYQANPLVIYTSTKSEESFLAALQQSDEVAEAPTVKLVKSSIFSYEQAWHRLIYLRVAGMDDGLDVKERIYFLSSMMDMGSEVQVRASGGLLAILENERIVDTLEQKESGNTSITIDSLAEISLNNFIKLDAASHEALQIFQIDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRQWFLRPILDLEVLNYRLNSISFFHSSEELVASLRETLKSVKDIPHLLKKFDSPSSICTSTDWAALLKSISALLHVNKIFEVGISEGLQEELKYLNLDIVEMASSCITTELAYVYELIIGVIDVNRTKEKGYPTVVKEGFCDELDELRQIYEELPEFLEEVSSLELAQLPDLCKNKLVPCIVYIQQIGYLMCIFEEKLEEATLEKLIEWEYTFGDADGETKRYFYRMPKTRELDNLLGDIYHKILDMERAITRDLFSHVSLFSTHLTKVATFAAELDCFLSMALVARQNNYVRPVLTEENLLDIKNGRHVLQEMTVDTFIPNDTKIFHDGRVNIITGPNFSGKSIYIKQVAIIVFLAHIGSFVPADAATVGLTDRIFCATGSRLMTAEQSTFMIDLHQIGMMLRHATSRSLCLVDEFGKGTLTEDGIGLLAGAINHFITCDEPPKVFVCTHLMDLLHGCSLTKSEQIKFYTMSILRPEDDSTHIEDIVFLYRLVPGHVHHSYGLHCALLAGVPDEIIKRAAVVLDAVSKNNCVERLCNENISAQDDEYKDAMEKLLKFDVDNGDLNLFFEDIFCNS* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3299 810 ProSitePatterns DNA mismatch repair proteins mutS family signature. 644 660 IPR000432 GO:0005524|GO:0006298|GO:0030983
Mtr5g3299 810 Pfam MutS family domain IV 373 474 IPR007861 GO:0005524|GO:0006298|GO:0030983
Mtr5g3299 810 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 22 791 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Mtr5g3299 810 Pfam MutS domain III 192 517 IPR007696 GO:0005524|GO:0006298|GO:0030983
Mtr5g3299 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 525 761 IPR027417 -
Mtr5g3299 810 Pfam MutS domain V 568 759 IPR000432 GO:0005524|GO:0006298|GO:0030983
Mtr5g3299 810 SMART mutATP5 564 759 IPR000432 GO:0005524|GO:0006298|GO:0030983
Mtr5g3299 810 CDD ABC_MSH5_euk 537 746 - -
Mtr5g3299 810 SUPERFAMILY DNA repair protein MutS, domain III 188 524 IPR036187 -
Mtr5g3299 810 PIRSF MSH2 1 800 IPR011184 GO:0005524|GO:0006298|GO:0030983
Mtr5g3299 810 Gene3D - 186 412 - -
Mtr5g3299 810 SMART DNAend 213 549 IPR007696 GO:0005524|GO:0006298|GO:0030983
Mtr5g3299 810 Gene3D - 525 796 IPR027417 -
Mtr5g3299 810 PANTHER MUTS PROTEIN HOMOLOG 5 22 791 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3299 K08741 - gmx:100797567 1425.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3299 5 41832675 41845751 Mtr5g3299 5 41832675 41845751 ECH