Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3297 ATGGGTCAGATCGTGAGGAGGAAGAAGAAAGGACGACCTTCTAAAGCAGATCTAGCTCGCCGTTCCGGTCAATCTCCGTCGACGACTCAATCTGACTTACGACGGAGTCGACGGCGGCGGAATGTGAGGTATCCTATCATTGACTTTGATGATTATCTTGATGAGGATGAGGAGGAAGAAGAAGATGAAGATGAGAGGAGGAGAGAGAAGAAGAAGTTGAAGCTTGTTGAGAAGTTGAACCAGGGTGTGGATGAGGAAGAAGATGAGGATGATGAAGAGGATTTGAAGACCAGTCGCGGTAGGTCGCGTGTGGGACACGCGCCTGAGTTTAAGAAACGGAAAAATGGAAGAAAAAGTGTAGATAGGGTTGATGATGATGAAGAGGATGAGGAAAATGAAGAAGATGAAAGAGAAGAGGAAGAAGAAATAGTTGAAGGAGATAATGAAAATGCTGAAGAACATGAAGATGATGAAGAAGAAGGTGAAGCTGATAGGGGTGAGGTAAAGGGTATAAAAGTGGATGATTCTAAAGGGCTCCACTCTGTTACAGGAACCCCTTTGAAGGCTCTGTCCGGGATTCCGTTGCCGTTGCCAGATAAGAGGACCCTTGAATTGATCCTTGACAAGCTTCAAAAGAAGGACACATATGGTGTGTATGCTGAGCCAGTTGATCCGGAAGAGCTTCCTGATTATCATGATGTCATTGATAATCCCATGGACTTTGCCACCGTGCGGAAGAAGTTGGCAAATGGATCTTATACTACATTGGAACAATTCGAGAGTGATGTATTTTTGATTTGTTCAAATGCAATGCAGTACAATTCGTCAGATACTATATACCACAAACAGGCACGCTCAATACAAGAACTAGCTAGAAAGAAGTTTGAGAAGTTAAGGATCAACTTGGAACGCTCTCAGAGTGAGCTGAAATCTGAACAAAAAACAGGATCCAATTCCTTAGGTAAGAAGCTGGCCAAAAGGCCACTTGGTTATACTTCACAGGAACCTGTTGGCTCTGATTTCTGCTCTGGTGCGACTCTTGCTACTACTGGAGATGTACTGCCAATTTCCCATCCAATTTCCCATCCAATGCAAGGTATCCTCTGTGAAAGGCCTGGCAACATTGATGGTCTTTTGGGAAGTTCTTTCTTTATTGATGCAAATCAAGAGAAAGCAGAAGACTTCATATCAGGGAAAGGCCTTCTCTCCAAGATGGGAAGGAAATCAACTGTGCAAGAATATGAACGTCGTGCTACTTATAACATGTCTAATCTACCAGTTACTAGATCTGATTCAGTATTTACGACATTTGAGAGTGAACTTAAGCAGTTAGTTACTGTTGGACTTCAAGCTGAATATTCCTATGCCAGGAGTTTGGCTCGTTATGCTGCAACTCTAGGACCTACTGCTTGGCGAATAGCTTCCCAGAAGATTCAACAGGCACTGCCATCGGGCTGTAAATATGGTCGAGGTTGGGTTGGAGAGTATGAACCACTTCCAACCCCAGTATTGATGCTTGATAACCGTGTCCAGAAAGAGCAACCTAGTCTGGCAACAAAGCTGCTGTCTACTACTAAACTGACAGAGGTAGGCAAAAATGGTAAGAATGTAGAGTCCACCTTTGAACATCCTGTAAATCAACCGATGTTTGAAGGGAAACAGCCTTCAGTTCGCCCTGGTTGTGGGCTCACATCAGAAGGAAAACCATCGTTGTTTGAGGGGAAACAGCCTTCAGTTCGCCCTAGCTGTGGGATCACATCAGAAGCAAAACCATCTTTCTTTGGTTCTGCTGGAGTAAGACCGAATGCTTCTATCAATCTCACTCATCAACAATCAAATGCTTCTATCAATCTCACTCATCAACAACCGAATGCTTCTATCAATCTCATTCATCAACAACCGAATGTCCAAACAAGGAACATTGGCAAATCTGAGAATAAGGGTTTGAAACAAGTGGAGTTGAACTCTTTACCCGCAAGCGATCTGAACAATGCCAGTCTAGTTTCGAAGCTTACAAGTAGTGCTCCTGCTGCTATTTCTAAACCTAGAGAGATGATACCAAGCAACATTAACATTTTAACGTCTATGCCTTTCAAGCAGCCAGATGCTAATGGAGTTGTTATTGGAGAGTTACCTAATGGCAAAGTCAGGAATAATAGTTTCAATAGACGGATGACTGCACCATCATCTGAAAGTACATCAACTCAAACAGCCAGATCGGCTCCCTTTGTTACCCATGGGCAAGAGCAGAGTCTTAGCGACCCAGTTCAGCTGATGAAGATGTTAGCTGAGAAGGCACAAAAACAGCAGGCTTCAAGTTCATCCAATCATTCCCCGGCCGAAACTCCACCAGTAACTCCATCAGTTCCACCTGGATGGAGAGAAGACTTAAGTAATGCCTCAGCAGCAGCTGCCCGTGCATGGATGTCTGTAGGAGCTGCAGGGTTTAAACAAGGACCTGAAAGTTCTAGTTCACCCAAAAACCAGATCTCTGCAGAGTCACTGTACAACCCGACCCGAGAGTACCAGCAGCATCTTTCAAGAATCAGGGCTGAGTTTCCTGCTGGTGGAATGCCTTTCCAGGCAGAGAAGAACAATTTCCCATTTCAGGCACTTGTACCTCAACACATGCATGCAGTTGGTGTTTCACAGTTTTCAAACCGGCCTATGGTTTTCCCTCAAGTAGCAGCTTCCGACTTAGCAAGATTTCAAATGCAGCCCCCTTGGCAAGCTGTCCGGCCTCATAGTCAACCAAGACAGAAACAAGAAACACTTCCGCCTGACTTGAACGTTGATTTCCAATCACCTGGGTCCCCTGCAAAACAATCTTCTGGCGTGCTGGTTGACTCGCAACAACCAGACCTGGCTTTGCAGCTATGA 2880 0.4476 MGQIVRRKKKGRPSKADLARRSGQSPSTTQSDLRRSRRRRNVRYPIIDFDDYLDEDEEEEEDEDERRREKKKLKLVEKLNQGVDEEEDEDDEEDLKTSRGRSRVGHAPEFKKRKNGRKSVDRVDDDEEDEENEEDEREEEEEIVEGDNENAEEHEDDEEEGEADRGEVKGIKVDDSKGLHSVTGTPLKALSGIPLPLPDKRTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIDNPMDFATVRKKLANGSYTTLEQFESDVFLICSNAMQYNSSDTIYHKQARSIQELARKKFEKLRINLERSQSELKSEQKTGSNSLGKKLAKRPLGYTSQEPVGSDFCSGATLATTGDVLPISHPISHPMQGILCERPGNIDGLLGSSFFIDANQEKAEDFISGKGLLSKMGRKSTVQEYERRATYNMSNLPVTRSDSVFTTFESELKQLVTVGLQAEYSYARSLARYAATLGPTAWRIASQKIQQALPSGCKYGRGWVGEYEPLPTPVLMLDNRVQKEQPSLATKLLSTTKLTEVGKNGKNVESTFEHPVNQPMFEGKQPSVRPGCGLTSEGKPSLFEGKQPSVRPSCGITSEAKPSFFGSAGVRPNASINLTHQQSNASINLTHQQPNASINLIHQQPNVQTRNIGKSENKGLKQVELNSLPASDLNNASLVSKLTSSAPAAISKPREMIPSNINILTSMPFKQPDANGVVIGELPNGKVRNNSFNRRMTAPSSESTSTQTARSAPFVTHGQEQSLSDPVQLMKMLAEKAQKQQASSSSNHSPAETPPVTPSVPPGWREDLSNASAAAARAWMSVGAAGFKQGPESSSSPKNQISAESLYNPTREYQQHLSRIRAEFPAGGMPFQAEKNNFPFQALVPQHMHAVGVSQFSNRPMVFPQVAASDLARFQMQPPWQAVRPHSQPRQKQETLPPDLNVDFQSPGSPAKQSSGVLVDSQQPDLALQL* 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3297 959 Coils Coil 53 73 - -
Mtr5g3297 959 MobiDBLite consensus disorder prediction 910 959 - -
Mtr5g3297 959 Gene3D - 198 319 IPR036427 GO:0005515
Mtr5g3297 959 MobiDBLite consensus disorder prediction 1 15 - -
Mtr5g3297 959 ProSiteProfiles Bromodomain profile. 211 281 IPR001487 GO:0005515
Mtr5g3297 959 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 959 - -
Mtr5g3297 959 MobiDBLite consensus disorder prediction 709 751 - -
Mtr5g3297 959 Pfam Bromodomain 205 285 IPR001487 GO:0005515
Mtr5g3297 959 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 959 - -
Mtr5g3297 959 MobiDBLite consensus disorder prediction 763 801 - -
Mtr5g3297 959 MobiDBLite consensus disorder prediction 124 163 - -
Mtr5g3297 959 SMART bromo_6 192 300 IPR001487 GO:0005515
Mtr5g3297 959 CDD Bromodomain 199 295 - -
Mtr5g3297 959 MobiDBLite consensus disorder prediction 766 782 - -
Mtr5g3297 959 Coils Coil 288 315 - -
Mtr5g3297 959 SUPERFAMILY Bromodomain 194 298 IPR036427 GO:0005515
Mtr5g3297 959 MobiDBLite consensus disorder prediction 64 81 - -
Mtr5g3297 959 MobiDBLite consensus disorder prediction 909 959 - -
Mtr5g3297 959 Coils Coil 120 157 - -
Mtr5g3297 959 MobiDBLite consensus disorder prediction 715 751 - -
Mtr5g3297 959 MobiDBLite consensus disorder prediction 306 328 - -
Mtr5g3297 959 PRINTS Bromodomain signature 228 244 IPR001487 GO:0005515
Mtr5g3297 959 PRINTS Bromodomain signature 244 262 IPR001487 GO:0005515
Mtr5g3297 959 PRINTS Bromodomain signature 262 281 IPR001487 GO:0005515
Mtr5g3297 959 MobiDBLite consensus disorder prediction 1 177 - -
Mtr5g3297 959 ProSitePatterns Bromodomain signature. 217 273 IPR018359 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3297 Mtr-Chr5 41814331 41820734 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3297 K22184 - gmx:100799986 966.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3297 5 41814331 41820734 Mtr5g3297 5 41814331 41820734 ECH