Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2273 ATGTGCAATCCAAAGCCATCTTCACCAACTTCACCATTTCTTTCTCCAACAAAAACTCACCTCATAAATCCTCATACCAAAGATCCTTATTCCAATTCTACCCTTGATGATGATCATGTTCAAGATGAACTTCATAGATGGCCTACTCTTAAAGAGGCCATAACAGAAATCAAAGAAATAGGAAAAATATCAGGTCCAACAACAATAACTGGTTTATTGTTATATTCAAGAGCTATGATATCAATGATTTTCCTTGGATATCTTGGAGAGATGGAACTAGCAGGAGGTTCACTTTCAATAGGCTTTGCAAATATCACTGGTTACTCAGTGATATCAGGTTTAGCCATGGGAATGGAACCAATTTGTGGACAAGCTTATGGAGCAAAACAATGGAAGATACTTGGCTTAACACTTCAAAGAACAGTTCTTCTTCTTCTTTCAACTTCAATCCCTATCTCATTCATTTGGATCAACATGAAAAGAATCCTTTTGTTTTCAGGTCAAGACTTAGAAATTTCATCAATGGCACAAAGTTTTATACTTTTTTTAGTGCCTGATCTTTTTCTACTTTCAATTCTTCACCCTTTGAGAATCTATTTAAGGACTCAAGGAATCACATTGCCCTTAACATATTGTTCAGCTGTTTCTGTTTTGCTTCATATCCCTCTAAATTTTCTCTTAGTGGTTCATTTCCAAATGGGGATTGCAGGGGTGTCAATAGCAATGGTTTTGACAAATTTAAACCTTGTTATTTTACTTTCATCTTTTTTATACTTCTCTAGTGTTTATAAAAAGTCATGGATTTCACCAAGTTTAGATTGCATTAAAGGGTGGTCCTCATTGCTTTCGCTAGCGATTCCAACTTGCGTTTCGGTTTGTCTCGAATGGTGGTGGTATGAGTTCATGATAATGATGTGTGGACTTTTGGTTAATCCAAAAGCAACAATTGCTTCAATGGGAATACTTATTCAAACAACATCTTTGGTTTATGTTTTTCCATCATCACTTAGTCTTGGTGTTTCAACAAGAATAGGAAATGAGTTAGGTGCAAATAGGCCACAAAAAGCAAGAATTTCAATGATAGTTTCACTTTTTCTTGCTATGGTTTTAGGACTTGGAGCAATGCTATTCACAACTTTGATGAGAAACCAATGGGGAAAGTTTTTCACAAATGACAGAGAAATCCTTGAGTTAACATCTATTGTGTTACCAATTGTTGGACTTTGCGAGCTCGGAAATTGTCCCCAAACAACCGGTTGTGGTGTCCTTAGGGGAAGTGCACGACCAACAATTGGAGCTAATATAAATTTAGGATCTTTTTACCTTGTTGGTATGCCAGTTGCAATCTTTCTAGGATTTGTGGCTAAATTGGGATTTCCAGGGTTGTGGATTGGGTTACTTGCAGCTCAAGGCTCATGTGCTATGCTTATGTTGGTTGTTCTTTGTAGAACTGATTGGAATTTGCAAGTTCAAAGAGCTAAAGAACTCACAAAAAGTTCAACTACAAGTGATGATGTTGATGCTAAATTACCTATATTTATGGAAGGTAATGTGAACAAGAATAATGTTCATGGTTGTCTTGAAGAAATTGTTATCACTCATGATGTGTTTACCAAGAAATCTTCACTTGAAACAGATCCACTGATCATAACATCTACTACTACCAATTGCATTGAAGATTAG 1683 0.3607 MCNPKPSSPTSPFLSPTKTHLINPHTKDPYSNSTLDDDHVQDELHRWPTLKEAITEIKEIGKISGPTTITGLLLYSRAMISMIFLGYLGEMELAGGSLSIGFANITGYSVISGLAMGMEPICGQAYGAKQWKILGLTLQRTVLLLLSTSIPISFIWINMKRILLFSGQDLEISSMAQSFILFLVPDLFLLSILHPLRIYLRTQGITLPLTYCSAVSVLLHIPLNFLLVVHFQMGIAGVSIAMVLTNLNLVILLSSFLYFSSVYKKSWISPSLDCIKGWSSLLSLAIPTCVSVCLEWWWYEFMIMMCGLLVNPKATIASMGILIQTTSLVYVFPSSLSLGVSTRIGNELGANRPQKARISMIVSLFLAMVLGLGAMLFTTLMRNQWGKFFTNDREILELTSIVLPIVGLCELGNCPQTTGCGVLRGSARPTIGANINLGSFYLVGMPVAIFLGFVAKLGFPGLWIGLLAAQGSCAMLMLVVLCRTDWNLQVQRAKELTKSSTTSDDVDAKLPIFMEGNVNKNNVHGCLEEIVITHDVFTKKSSLETDPLIITSTTTNCIED* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2273 560 PANTHER MULTIDRUG RESISTANCE PROTEIN 35 510 - -
Mtr5g2273 560 TIGRFAM matE: MATE efflux family protein 78 463 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Mtr5g2273 560 Pfam MatE 66 226 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Mtr5g2273 560 Pfam MatE 287 449 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Mtr5g2273 560 CDD MATE_eukaryotic 56 492 IPR045069 GO:0042910|GO:1990961
Mtr5g2273 560 PANTHER PROTEIN DETOXIFICATION 35 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2273 Mtr-Chr5 29850786 29853009 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2273 K03327 - qsu:111988266 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2273 5 29850786 29853009 Mtr5g2273 5 29850786 29853009 ECH