Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2271 ATGGCTGTTTCAACTAGTTTCTATGGTGCTAAATTGGAACCTTTGTTCCTTAAATGTTGTTCTTCTTCTTCAACAACATCTTCCTCTTATGTTACTACTCATTTATCATTTTTTGGTAGTAATAAAAAGAGCTTTGTTCAAAGTAGAGGCTCAATTCGTTGTGACGCTTCATCTTCTGATGTTTTGATTGATCCTAGTGATAATGCTAAATCTGTTTCTGCACTACAACAGCTTAAAGCTTCTGCAGCTGATAGATATACAAAGGAAAGGAGCAGTATTGTCGTTATAGGGCTAAGTATTCATACTACACCCGTCGATGTGCGCGAAAAACTTGCCATACCAGAAGCAGAATGGCCTAGAGCCATTGGTGAGCTTTGTAATCTGAATCATATTGAAGAAGCAGCAGTTCTGAGCACCTGCAACCGAATGGAGATATATGTTGTCGCACTTTCTCAGCACCGTGGTGTCAAAGAAGTCACCGAATGGATGTCCAATACAAGTGGTATACCTGCATCAGAGCTTTCAAAGTATCTATTTTTGCTATACAACAAAGATGCAACACAACACCTTTTTGAAGTATCAGCAGGTCTTGATTCTCTTGTAATGGGAGAAGGTCAAATCCTTTCACAAGTCAAACAAGTTGTGAAAGCAGGACAAGGAGTTAATGGCTTTGGTAGAAACATCAGTGGTTTGTTCAAGCACGCAATCACCGTCGGTAAAAGGGTCCGAACCGAGACCAACATTGCAGCTGGTGCAGTTTCTGTTAGCTCGGCTGCAGTCGAATTAGCCTTGATGAAGTTACCTGATCAAGCCTCACATGGAAATGCAAGAATGCTTGTTATTGGAGCTGGTAAAATGGGGAAGCTTGTGATCAAACATTTGGTTGCAAAAGGGTGTAAAAAGATGGTAGTTGTTAATAGAACCGAAGGGAGAGTCGCAGCAATCCGTGAAGAAATAAATGATGTTGAGATAATCTACAAACCGCTTTCGGAAATGCTTGAATGTATTGGTGAAGCAGATGTTGTTTTCACTAGCACTGCATCAGAGAATCCTTTGATTTTTAAACAAAATGTTAAGGAACTTCCTTTAGCAAGCGAAGAAATGGGAGGAAAACGCCTCTTCGTAGATATTTCTGTTCCGAGAAACGTAGGTTCATGTGTCGATGACCTTGAGTCTGTTAAGGTTTACAATGTTGATGATCTTAAAGAGGTTGTGGCTGCCAACAAAGAGGATAGGCTAAGAAAAGCAATGGAAGCACAAGTGATCATCGGCGAAGAATCGGGACAATTTGAAGCTTGGAGAGACTCATTAGAAACTGTTCCAACCATTAAGAAATTAAGGGCTTATGCTGAAAGATTAAGGGTTGCTGAGCTTGAGAAATGTTTAGGTAAAATGGGTGATGATATAAATAAGAAGACACAAAAAGCTGTGGATGATCTAAGTAAAGGTATAGTGAATAAAATGCTTCATGGTCCAATGCAACATTTGAGATGTGATGGGAGTGATAGTAGGACTTTGAGTGAGACACTTGAGAATATGCATGCTTTGAACAGAATGTTTAGTCTTGAAACTGAGGTTTCTGTTTTGGAGCAGAAGATTAGAGCTAAGGTGGAGCAAAAACCACAGTGA 1629 0.399 MAVSTSFYGAKLEPLFLKCCSSSSTTSSSYVTTHLSFFGSNKKSFVQSRGSIRCDASSSDVLIDPSDNAKSVSALQQLKASAADRYTKERSSIVVIGLSIHTTPVDVREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSNTSGIPASELSKYLFLLYNKDATQHLFEVSAGLDSLVMGEGQILSQVKQVVKAGQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPDQASHGNARMLVIGAGKMGKLVIKHLVAKGCKKMVVVNRTEGRVAAIREEINDVEIIYKPLSEMLECIGEADVVFTSTASENPLIFKQNVKELPLASEEMGGKRLFVDISVPRNVGSCVDDLESVKVYNVDDLKEVVAANKEDRLRKAMEAQVIIGEESGQFEAWRDSLETVPTIKKLRAYAERLRVAELEKCLGKMGDDINKKTQKAVDDLSKGIVNKMLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEVSVLEQKIRAKVEQKPQ* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2271 542 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 418 522 IPR015896 GO:0008883|GO:0033014|GO:0050661
Mtr5g2271 542 ProSitePatterns Glutamyl-tRNA reductase signature. 189 212 IPR018214 GO:0008883
Mtr5g2271 542 Hamap Glutamyl-tRNA reductase [hemA]. 92 520 IPR000343 GO:0008883|GO:0033014|GO:0050661
Mtr5g2271 542 Gene3D - 252 405 - -
Mtr5g2271 542 TIGRFAM hemA: glutamyl-tRNA reductase 93 502 IPR000343 GO:0008883|GO:0033014|GO:0050661
Mtr5g2271 542 PANTHER GLUTAMYL-TRNA REDUCTASE 1 540 - -
Mtr5g2271 542 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 92 248 IPR036343 GO:0008883|GO:0033014|GO:0050661
Mtr5g2271 542 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 96 246 IPR015895 GO:0008883|GO:0033014|GO:0050661
Mtr5g2271 542 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 416 502 IPR036453 GO:0008883|GO:0033014|GO:0050661
Mtr5g2271 542 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 251 412 IPR036291 -
Mtr5g2271 542 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 1 540 - -
Mtr5g2271 542 CDD NAD_bind_Glutamyl_tRNA_reduct 93 416 - -
Mtr5g2271 542 Gene3D - 91 251 IPR036343 GO:0008883|GO:0033014|GO:0050661
Mtr5g2271 542 Pfam Shikimate / quinate 5-dehydrogenase 263 404 IPR006151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2271 Mtr-Chr5 29821755 29824785 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2271 K02492 - gmx:100819951 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2271 5 29821755 29824785 Mtr5g2271 5 29821755 29824785 ECH