Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2261 ATGAATCTTCATGCCATGGTTTCTTTACCTTCTGTTGTAGTTGTTGGTGTCACTGCAACTCTTAAGCTCCACCCACAATTCAGAAAATACCCACCAACATCTTTTCCAATAGATAAGGGTCAAAGCATTTCATTACAGAAAACCCACATATCCACACATTTGGATCCCAACAGAAACCTTAAATTTCAAGAAGCATTTTCATTGGCAAAAGAAAGTAACGAAGAAGTGGATTCATCTTTCTACCCTCCCTTGTTACAACAATGCTTGGAAAATTGCTCCTTTTCATCCACACAAATTATTCATTGTCACATAGTGAAAACAGGTAGTCATGAAGACCCTTTTTTGTCATCATTTCTAGTGACCGTTTACGCCAAATGCGGTAGAATGGAGTGTGCTCAACAAGTATTTGATCACATGAATAGAAGAAATGCTGTTGCTTGGACAAATTTAATGAAGGGTTATGTGCAAAACTCAATGCCAAAACATGCTATACATTTGTTTGAAGAGATGCTGTTACATTCAGAGTGTTACCCTTCAAATTACACTCTTGCTATAGCCCTTAATGCTTGTACATCTTTGCATTCATTGAAGTTAGGAGAACAGTTACATGCTTACATAATCAAATACCATGTTGATTTTGACACAAGTATCGGCAATGCGCTTTGTAGTTTATACACGAAATGTGGTGGTAAATTGGAAGTTGGTCTAACAGCATTTAGGAGAATCAAAGAAAAGGATGTTATTTCTTGGACTGCAGCTATTTCTGCATGTGGCGAAAAAGGTGAAGCTATGAAGGGTGTGAGAGTTTTTGTTGAGATGCTTTTAGATGAAGTTCAGGTTCAACCTAATGAGTACACTTTAACTAGTGCCTTGAGTCAGTGCTGTGAGGTTAAGTGCTTAGAGCTTGGGATTCAGGTTCATGCTTTGTGTACTAAATTAGGATACGAGTCAAACCTACGAGTTCGGAATTCTTTATTGTATCTGTACCTTAAATGTGGTTGTATTGTTGAAGCTCAAAGGTTGTTTAAAGGAATGAATGATGTTAATTTGGTAACATGGAATGCTATGATTGCTGGACATGCACAAATGATGGAGCTTTCAAAGGATAATCTTTCTGCATACCAAAAAGGAATTGAAGCACTCAACCTTTTCTCGAAGTTGAATCGGTCTGGCATGAAACCTGATCCGTTTACCTTTTCAAGTGTGTTGAGTGTTTGCAGTAAAATGATGGCTTTAGAACAAGGTGAACAGATTCATGCTCGGACAATCAAAACCGGGTTCTTATCAGATGTTGTTGTAGGTTCTTCTATGATTAATATGTATAACAAATGTGGGAGCATTGAGAGAGCAAGCAAAGTTTTTCTAGAGATGTCTATTAGAACGATGATATTATGGACTACAATGATTACTGGTTTTGCACAGCATGGTTGGTCAAAGCAAGCATTGAATCTTTTCGAGGATATGAAACTTGTAGGTATCAGACCAAACCTGGTCACTTTTGTCGGCGTTTTATCAGCTTGTGGAAGTGCTGGTATGGTCAATGAAGCATTCAATTACTTTGAGATTATGCAAAAGGAATATAAAATTAAACCTGTGATGGACCATTATGTTTGTTTGGTTGATATGTTAGTGAGGCTCGGACAGGTACAGGAAGCTTTCGATTTGATAAAGAAAATGGATTATAAGGCTAGCGAGTTTATTTGGTCAAATTTGATTGTTGGTTGTCTAAGCCAAGGGAATCTAGAATTGGGTTGTGATGCTGCAGAAAAGTTGTTAAGTCTCAAACCAAAAGATACAGAGACATACAAATTGCTGTTGAATGCGTACGTCTCAGCCGGACGATATGACGATGTTTCTAGGGTGGAGAATATAATGAGAGAAGAGAAAATTGGAGAGTTAAAAGATTGGAGCTGGATTAGCATCAAAGACAGAGTGTATTCATTTCAAACAAATGACAAAGCAGACATAGAAAGTTCAATAGGTAAATCATTGGAGGATTTACATATCAAAGCAAAGAATCTTGGATATGAGATGTTAGAATATGTGGAAAAAAGTGACAAAGAGAAAGAAAAGACATCCTCACCTACCATTTATCACAGTGAGAAGCTAGCCATTACATTTGGGTTGGAGAATTTGCCAAATTCTTCACCAGTAAGAGTTGTTAAGAATACCTTAATGTGCAGGGATAGTCACAATTTTGTTAAGTACATCTCAACACTGACTAGTAGGGAAATCATTGTTAAAGATAGTAAGAGGCTACATAAATTTGTCAATGGACAATGCTCATGTGGGAATATTGGTGGTTTTCTCTGA 2313 0.3718 MNLHAMVSLPSVVVVGVTATLKLHPQFRKYPPTSFPIDKGQSISLQKTHISTHLDPNRNLKFQEAFSLAKESNEEVDSSFYPPLLQQCLENCSFSSTQIIHCHIVKTGSHEDPFLSSFLVTVYAKCGRMECAQQVFDHMNRRNAVAWTNLMKGYVQNSMPKHAIHLFEEMLLHSECYPSNYTLAIALNACTSLHSLKLGEQLHAYIIKYHVDFDTSIGNALCSLYTKCGGKLEVGLTAFRRIKEKDVISWTAAISACGEKGEAMKGVRVFVEMLLDEVQVQPNEYTLTSALSQCCEVKCLELGIQVHALCTKLGYESNLRVRNSLLYLYLKCGCIVEAQRLFKGMNDVNLVTWNAMIAGHAQMMELSKDNLSAYQKGIEALNLFSKLNRSGMKPDPFTFSSVLSVCSKMMALEQGEQIHARTIKTGFLSDVVVGSSMINMYNKCGSIERASKVFLEMSIRTMILWTTMITGFAQHGWSKQALNLFEDMKLVGIRPNLVTFVGVLSACGSAGMVNEAFNYFEIMQKEYKIKPVMDHYVCLVDMLVRLGQVQEAFDLIKKMDYKASEFIWSNLIVGCLSQGNLELGCDAAEKLLSLKPKDTETYKLLLNAYVSAGRYDDVSRVENIMREEKIGELKDWSWISIKDRVYSFQTNDKADIESSIGKSLEDLHIKAKNLGYEMLEYVEKSDKEKEKTSSPTIYHSEKLAITFGLENLPNSSPVRVVKNTLMCRDSHNFVKYISTLTSREIIVKDSKRLHKFVNGQCSCGNIGGFL* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2261 770 Gene3D Tetratricopeptide repeat domain 513 694 IPR011990 GO:0005515
Mtr5g2261 770 Gene3D Tetratricopeptide repeat domain 300 412 IPR011990 GO:0005515
Mtr5g2261 770 PANTHER OS01G0913400 PROTEIN-RELATED 72 712 - -
Mtr5g2261 770 Pfam E motif 580 639 IPR046848 -
Mtr5g2261 770 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 598 632 IPR002885 -
Mtr5g2261 770 Pfam PPR repeat family 143 190 IPR002885 -
Mtr5g2261 770 Pfam PPR repeat family 463 507 IPR002885 -
Mtr5g2261 770 Pfam PPR repeat family 349 407 IPR002885 -
Mtr5g2261 770 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 72 712 - -
Mtr5g2261 770 Pfam PPR repeat 435 457 IPR002885 -
Mtr5g2261 770 Pfam PPR repeat 119 142 IPR002885 -
Mtr5g2261 770 Pfam PPR repeat 536 559 IPR002885 -
Mtr5g2261 770 Pfam PPR repeat 248 274 IPR002885 -
Mtr5g2261 770 Pfam PPR repeat 323 346 IPR002885 -
Mtr5g2261 770 Gene3D Tetratricopeptide repeat domain 198 299 IPR011990 GO:0005515
Mtr5g2261 770 Gene3D Tetratricopeptide repeat domain 413 512 IPR011990 GO:0005515
Mtr5g2261 770 Gene3D Tetratricopeptide repeat domain 68 197 IPR011990 GO:0005515
Mtr5g2261 770 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 178 IPR002885 -
Mtr5g2261 770 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Mtr5g2261 770 Pfam DYW family of nucleic acid deaminases 680 765 IPR032867 GO:0008270
Mtr5g2261 770 SUPERFAMILY TPR-like 533 617 IPR011990 GO:0005515
Mtr5g2261 770 TIGRFAM PPR: pentatricopeptide repeat domain 464 496 IPR002885 -
Mtr5g2261 770 TIGRFAM PPR: pentatricopeptide repeat domain 145 179 IPR002885 -
Mtr5g2261 770 TIGRFAM PPR: pentatricopeptide repeat domain 498 531 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2261 Mtr-Chr5 29696359 29699799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2261 81 765 Glycoside Hydrolase AT3G49170 33.094 8.03e-127 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2261 - - mtr:MTR_5g067140 1528.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2261 5 29696359 29699799 Mtr5g2261 5 29696359 29699799 ECH