Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2259 ATGGCCATGGCACTTCGAAGACTCACTTCCACCATCAACAAACCTACTTCTCTCTATCGCTTGTCATCTTCTCTCTCCGCTCAACACACTCACAAATCTCACCCCGATTGGATTAAACAACTCAACGATCCTCTTGGTGTAGTAGATCCTGAGATCGAAGATATAATCGAACTAGAAAAAGCTCGTCAATGGAAGGGGCTAGAGCTTATACCATCAGAAAATTTTACGTCGTTGTCGGTGATGCAAGCGGTTGGATCGGTTATGACGAATAAATACAGTGAAGGTTATCCTGGTGCTAGATACTATGGTGGAAATGAGTACATTGACATGGCTGAGACTTTGTGTCAGAAGCGTGCATTGGAAACTTTTGGATTGGATCCAACACAATGGGGAGTCAATGTGCAGTCATTATCTGGATCTCCTTCTAACTTCCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCACTTGATCTCCCCCATGGTGGGCATCTATCACATGGATATCAGACTGACACCAAGAAGATATCAGCTGTATCTATATTCTTTGAAACAATGCCATACAGGTTGGATGAGAGCACTGGTTATATTGACTATGACCAGATGGAGAAAAGTGCTGCACTTTTTAGGCCAAAATTAATAGTTGCCGGTGCTAGTGCTTATGCCCGTCTTTATGATTATGCGCGTATTCGCAAGGTCTGTGATAAACAGAAGGCAGTTATGTTGGCTGATATGGCACACATCAGTGGATTAGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCAGATGTTGTAACAACCACAACACATAAGTCACTTCGTGGACCACGTGGGGCTATGATATTCTTCAGGAAGGGTCTGAAAGAGATAAACAAGAAAGGGCAGGAAGTGCTGTATGACTACGAAGACAAGATAAATCAGGCTGTTTTCCCTGGACTTCAAGGTGGTCCCCACAATCACACTATTACAGGCTTAGCAGTTGCATTGAAGCAGGCTATGACACCGGAATTCAAGAATTACCAGAAACAAGTTCTTAGTAACTCCTCGACATTTGCACAGAGCTTGTTAGAGAAAGGCTATGACCTTGTATCGGGTGGAACTGAGAACCATTTGGTGTTGGTAAACTTAAGAAACAAGGGCATTGATGGTTCAAGGGTTGAGAAGGTGTTAGAATCAGTTCATATAGCTGCCAATAAAAACACTGTTCCAGGAGATGTGTCTGCAATGGTTCCTGGAGGGATCAGAATGGGAACTCCTGCTCTTACATCTAGGGGTTTTGTTGAGGATGATTTTAAAAAAGTAGCTGAATACTTTGACGCGGCTGTCAAAATAGCCTTACAGATTAAGGAAAATTCTAAAGGCACAAAGTTGAAGGATTTTGTGGAAGCTATGGAGTCCGATTCACAAGTTCAATCTCAAATCGCTGATCTCCGCCATGACGTAGAAGGTTATGCTAAGCAGTTTCCCACAATTGGTTTTGAGATAGAGACAATGAAGTATAACAAGTGA 1524 0.4232 MAMALRRLTSTINKPTSLYRLSSSLSAQHTHKSHPDWIKQLNDPLGVVDPEIEDIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALETFGLDPTQWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSAALFRPKLIVAGASAYARLYDYARIRKVCDKQKAVMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEINKKGQEVLYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQKQVLSNSSTFAQSLLEKGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEDDFKKVAEYFDAAVKIALQIKENSKGTKLKDFVEAMESDSQVQSQIADLRHDVEGYAKQFPTIGFEIETMKYNK* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2259 507 Hamap Serine hydroxymethyltransferase [glyA]. 44 497 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Mtr5g2259 507 PIRSF SHMT 27 502 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Mtr5g2259 507 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 268 284 IPR019798 GO:0030170
Mtr5g2259 507 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 7 506 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Mtr5g2259 507 Gene3D - 74 347 IPR015421 GO:0003824
Mtr5g2259 507 PANTHER SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL 7 506 - -
Mtr5g2259 507 Gene3D Aspartate Aminotransferase, domain 1 49 494 IPR015422 GO:0003824
Mtr5g2259 507 SUPERFAMILY PLP-dependent transferases 36 498 IPR015424 -
Mtr5g2259 507 Pfam Serine hydroxymethyltransferase 47 442 IPR039429 -
Mtr5g2259 507 CDD SHMT 48 469 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2259 Mtr-Chr5 29665411 29674139 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2259 K00600 - gmx:100816213 915.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2259 5 29665411 29674139 Mtr5g2259 5 29665411 29674139 ECH