Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2253 ATGGCGACGTTCGAACTTTATCGTAGGTCGACGATCGGACAGTGCTTGACCGATACTTTGGATGATCTGGTTCAGAATGGAACTCTTAGTCCTGATCATGCCATTAAGATTCTCATTCAGTTTGATAAGTCTGTGACTGAGGCTCTGGAGACGAAAGTTAAGAGCAAGGTTTCTATCAAGGGACATCTTCATACATACAGATTTTGTGACAATGTCTGGACCTTCATCTTACAAGATGCTTTGTTTAAGAGTGAAGACAAACAAGAGAATGTTGGACGGGTTAAAATCGTGGCATGTGACTCAAAGTTGCTCGGTCAATAA 321 0.4174 MATFELYRRSTIGQCLTDTLDDLVQNGTLSPDHAIKILIQFDKSVTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALFKSEDKQENVGRVKIVACDSKLLGQ* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2253 106 CDD TFIIA_gamma_C 57 102 IPR015871 GO:0005672|GO:0006367
Mtr5g2253 106 PIRSF TFIIA_gamma_hum 1 106 IPR003194 GO:0005672|GO:0006367
Mtr5g2253 106 Pfam Transcription initiation factor IIA, gamma subunit 60 101 IPR015871 GO:0005672|GO:0006367
Mtr5g2253 106 PANTHER TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 1 106 IPR003194 GO:0005672|GO:0006367
Mtr5g2253 106 CDD TFIIA_gamma_N 4 51 IPR015872 GO:0005672|GO:0006367
Mtr5g2253 106 Gene3D - 3 54 IPR009083 GO:0005672|GO:0006367
Mtr5g2253 106 Pfam Transcription initiation factor IIA, gamma subunit, helical domain 4 49 IPR015872 GO:0005672|GO:0006367
Mtr5g2253 106 Gene3D - 55 106 IPR009088 GO:0005672|GO:0006367
Mtr5g2253 106 SUPERFAMILY Transcription factor IIA (TFIIA), alpha-helical domain 4 54 - -
Mtr5g2253 106 SUPERFAMILY Transcription factor IIA (TFIIA), beta-barrel domain 52 102 IPR009088 GO:0005672|GO:0006367
Mtr5g2253 106 PANTHER TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 1 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2253 Mtr-Chr5 29535523 29539846 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2253 K03123 - fve:101306952 192.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2253 5 29535523 29539846 Mtr5g2253 5 29535523 29539846 ECH