Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2250 ATGGATTCGGAATGGGAAACTCTTCATACAATCTTAACCAAATCACTCACCATCCTTTCCTGGCCTCCAATTACTTTGCTTTGTCCTTTATATGTTTCTATTCGGACGTTGGAGAGTGATTGTCGTTCCAGTAATCAACGTTGTCTTGTTTTTTGGGTTCTCTTTGCTTTCTCTATGATCATTGAACGTGAATTTGCAGTGTTATTTAGTTGGCTCCCATGGTGGTCTCATGTGAAAGCCTTGGCAACTATCCTCTTGTTAATACCTTATTTTGGTGCTGCGCCATACATCTACAAGCTCTTAATTAAATGCTACGGTACTGGGAACATATGTGCATGGACAATGACCATCTTCAATCTGAAAATCACACATTTTGAATTGAGCGAGGATGGAAACATACTTTCTGAATCGGATACGGGCATAAAAGCATTTTTAGAATCAGATGATAATAGCAAAAGTGTTGAAGAATCGGATGATAATAGCAAAAGTGTTGAAGTCTCTGCCCAGACAATTATTACAACTCATTTACAAGAGAAGAAACTTTTAGTATATCAGGGGAGAGATGATGTTAGAGCTGATTGTGACAAGACAAGCAGCGGTTATTATATAAGTAAAAAGAAAGTCCAGAAGGAATGGAGTTGTGCTTTATGTCAAATTAGTACTACAAGTGAAAATTGCTTAGGGTCACATCTTCAAGGGAAGCAACACAAGGCTAAGGTAAAAGAACTTCGAGTCGGGTTACATGCAAAGAATATACCGTATGTTCTATCATTTACGCAGGAAAGAATCAAAGGAATGGTTCTACTTAAGAATCTCAACCAAATTGCAAACATTTTGAATCCAGTTTCTAGATCCATAATATGGTGTGAATGGAAAAAGCCGGAAATCGGATGGACAAAACTAAATACCGACGGTTCTGTAAATAAAGAAACAGCTGGTTTTGGTGGTCTGCTTCGTGATTATCGGGGTGAACCAATTTGCGCATTTGTCTCGAAAGCTCCTCAAGGAGATACTTTCTTGGTGGAACTTTGGGCTATATGGAGAGGCCTTGTTCTCTCTTTAGGTCTTGGCATAAAATCAATATGGGTAGAGTCAGACTCCATGAGTGTTGTTAAGACAATCAATAAAATGCAACAATGTCCAAAAGCTGAAACCTGCGTGAAAAAAATTTGGAAACTCTTGAGTAAGTTTGACGAGTCTCGGATTTCTCACTCGTGGCGCGAAACTAATAGAGCGGCAGATCACCTTGCAAAGATGGCTGTTTGTGGAAATGATGTGGTTTTGTGGCCTTCTGATTTTTCACATAGCCTCTGCAATATCATTCAAGATGATGCCAGAGGAACAAAATATCTTAGACGGTGA 1362 0.3906 MDSEWETLHTILTKSLTILSWPPITLLCPLYVSIRTLESDCRSSNQRCLVFWVLFAFSMIIEREFAVLFSWLPWWSHVKALATILLLIPYFGAAPYIYKLLIKCYGTGNICAWTMTIFNLKITHFELSEDGNILSESDTGIKAFLESDDNSKSVEESDDNSKSVEVSAQTIITTHLQEKKLLVYQGRDDVRADCDKTSSGYYISKKKVQKEWSCALCQISTTSENCLGSHLQGKQHKAKVKELRVGLHAKNIPYVLSFTQERIKGMVLLKNLNQIANILNPVSRSIIWCEWKKPEIGWTKLNTDGSVNKETAGFGGLLRDYRGEPICAFVSKAPQGDTFLVELWAIWRGLVLSLGLGIKSIWVESDSMSVVKTINKMQQCPKAETCVKKIWKLLSKFDESRISHSWRETNRAADHLAKMAVCGNDVVLWPSDFSHSLCNIIQDDARGTKYLRR* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2250 453 Gene3D - 298 421 IPR036397 GO:0003676
Mtr5g2250 453 SMART ZnF_U1_5 209 243 IPR003604 GO:0003676|GO:0008270
Mtr5g2250 453 Pfam Reverse transcriptase-like 302 420 IPR002156 GO:0003676|GO:0004523
Mtr5g2250 453 PANTHER HVA22-LIKE PROTEINS 11 453 IPR004345 -
Mtr5g2250 453 CDD RNase_H_like 301 418 IPR044730 -
Mtr5g2250 453 PANTHER PROTEIN A, PUTATIVE ISOFORM 1-RELATED 11 453 - -
Mtr5g2250 453 SUPERFAMILY Ribonuclease H-like 298 425 IPR012337 -
Mtr5g2250 453 Gene3D Classic Zinc Finger 203 246 - -
Mtr5g2250 453 Pfam Zinc-finger of C2H2 type 212 236 - -
Mtr5g2250 453 Pfam TB2/DP1, HVA22 family 29 103 IPR004345 -
Mtr5g2250 453 SUPERFAMILY beta-beta-alpha zinc fingers 206 245 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2250 Mtr-Chr5 29487575 29491156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2250 290 421 Glycoside Hydrolase AT2G33160 28.148 3.91e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2250 - - gmx:102661917 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2250 5 29487575 29491156 Mtr5g2250 5 29487575 29491156 ECH