Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2226 ATGCGTGTTACAGTCGATCTAGGGTTTTATTCTTTCCTTTTCATCGCTTTATTCTGCGTTGTGTTGCCGGTGATTGGATTCTTCATACGTTACAAGTGGCGCCGTGCGGCAGAGAGGGCGGAGGAGGTTAGGAGATTGTTGATTTTCGCGGCCGAGGAGTCTGCTAGGGTTGAGCGTGAGGCGGCAACTTCGTATCAATATGTCACCGCTGCGAATTCGTATCAAATTCAAAACGATGCCGTTCCAGCTTCGTATCAATATGTGAACAAGAATTTGTATCAAAACGTTGCTGTTTCGGTTGCTAAGAATAAGAATAAGAATAATCAATGTGCTGTGTGTTTCTCTCCCACTACAACGCGGTGTTCAAAGTGCAAATTGGTTCATTACTGTTCTGCTAAGTGTCAATTTGCTCATTGGCGTCAAGGTCACAAAGACAAATGCCATCCTCCCGGTACAGCTCGCCAGAGCCAGGCTGATAATCTGGAATGCGATATTGGTAAGAAGGTAGTTGAGCCAGACCACCGTGGAATCAATGATGAGAAGTCTCGGGTTGAAAGCCCAGAAGATAGAACATCCTCTGAGAAACCTCCATTCTCTGATGTAAAACCTCCCAAAATTTCATGTGCAGCGAATGATAATGCAAGGGTTGAGTCTCTTGCAGAGGAGAATACTGCAGACTCTAATTCTGAATTATCATGCAACTCATTTTCTGGATTCTCTGCTTCCACTGGTGCTAACGAGTCATCTGATGATTCATCTGGTTGTGAGAGTATCATCTCAAATGAACATGTTAGATCCGAGGGACATATTTGTACTGACCCCACTTTTGACGACTTGGACAACACATCAAATGGTCATAGCATCGGTGCAACCATCCCATTGTCACCTAAGTTTGCTAGTTTGGTTGATTCAGTTATACCTGTTTTTGGTAAAGAAGAGATTAAGCTCACATCAAACGGTAGATCAGGTTTGACGACGCAGAAAGGGGGAACAACAGAACCTTCTAATGCGTCTTCTGAATTTTGGAATTGCACTCTTGATTTAAAGGGGACAAAAGATGACTCTTTTGCTGACACTCTTCCATCTCACTCTAATGAATCTCGTACGAAGTCTGTTGGGAAAAATATTCCACATGCAGGATCAGGATCAGGATCTTTTCAGAACGAAGGTCTTGTCTCTTCACGTCGTGCAGATGCTTCAAGCATCAATAACTCATACACTGTTGCCTCTAAGGTATCAAATCATGTTACAATCAACCCCAGAAGCAGCTTGAGATCTACTGAAGTTAGTTGTTTTCCTCGAACATCTGCTGATTCTAAGTTAGTTTCAAAAGATGAAGAGGAGGAACATATACATTACAGTTCAAAATGTAAGAAAAATGGTACCCGTTCTGGCACTGCTTGTCCAGTCCAGGTTGCTAACTGTTCTCCAAATTCTAAGGATGGCCTTAAAGCATCTGTTCTGAAAGTTGTTGATCACGATCAATTTAGAGGATCAAATTTGTCCAAACACTTTCCAGTAGCTGTTGGGGGTGATATTGCTGGAAAATACAGTGACAAGGGTCTTTTTCCATATGATCTGTTTGTCAAGCTTTATAACTGGAACAGAGCGGAGTTTCAACCATTTGGTCTTACGAATTGTGGAAACAGCTGTTATGCAAATGCTGTACTCCAGTGCTTGGTATTTACACCACCGTTGACCGCATATTTGCTTCAAGGACTTCATTCTAAATCATGTGCAAGTAAAAAATGGTGTTTCACCTGCGAGTTTGAAAGTTTGATTTTGAAGTCAAAAGACACAAAATTTCCCCTCTCACCTATAGGCATACTCTCTCAACTACAGAGTATTGGAAGTCAACTTGGTAATGGAAGAGAAGAGGATGCACATGAATTTCTAAGGCATGTAGTTGAAACAATGCAATCTGTTTGCCTTATGGAATGTGGGGTTGATGCATCAGATGCATTAAAAGAGCAAACTAATTTAGTTGGTCTTACCTTTGGAGGCTACCTACGCTCGAAGATACAATGCATGAAATGTGGAGGGAAATCTGAGCGCCAAGAAAGGATGATGGATTTAACTGTTGAGATAGAAGGGGAGATAACATCTCTGGAGGAAGCCCTTAAACAATTTACGAGCACCGAGACTCTGGATGGAGAAAACAAATACCATTGTGGCAGATGTAAATCTTATGAGAAGGCCAAGAAGCAAATGGCAGTTTCAGAGGCACCTAATGTTCTAACAATTGCATTGAAGAGATTTCGGTCTGGAAAATTTGGGAAGCTTAATAAGTCAATTCGGTTTCCAGAAATACTTGACTTGGCACCCTTCATGAGTGGGACTAGTGATCTGGCCATATACAGGCTGTATGGGGTCGTTGTACACCTGGATACCATGAACGCTGCTTTTTCAGGTCACTACGTGGGTTATGTGAAGAATTTCCAGAACAGTTGGTTCAAGGTTGATGACAGTGTGGTGACACCTGTTGAATTGGAAACAGTCTTGACTAAAGGCGCATACATGCTTCTTTATGCAAGGTGCTCACCTAGGGCTCCAAGATTAATCAGGGACATGATAGTGTCCTCGGATTCAAAAAGCAAAGTCAATGGAAAATCTGTCATAATGAAGCACAAACATGCATCTTCACATTCTGGTTCTGCTGAACGGATCATGTCTAATTCAATTTCTTCATGCGGTTTACCCACTTTAGAGACTATCCATTCCAAGTTTCATCACATGAAAAGCATCATGGAAGAAGACTCATCAAGTGATAATTCATCCCTTATCAGCAACAATTCCGATGAATGTTCTTGCAGCACCGATAGCACATGTGATTCAACAGGTACCGACGAATTTGCTGATTATATTTTTGGTAACTCAGTACGAGGCGGGGGTGGCGATTCCTGCACAAGTTCGAGGGTGGACATAGACAGTCATTTGTATAGGAGAAGACCGGTGAATGTTGAAAGGAGTGAGGGAGGTGTTTCTCATTTGCATCATAACACAAGTATAGAGCATAGGAAATTAGATACATGTAGGAGTAGTAGTAGTTTTAGGGAGAGTGATTCTTTTGAGAGAGCAGGATCCAATCATTTTAGTCATATAAATTCTGGTGTATCATATAGAAAGACAAGAGAAAGAAAGGATTGA 3147 0.4172 MRVTVDLGFYSFLFIALFCVVLPVIGFFIRYKWRRAAERAEEVRRLLIFAAEESARVEREAATSYQYVTAANSYQIQNDAVPASYQYVNKNLYQNVAVSVAKNKNKNNQCAVCFSPTTTRCSKCKLVHYCSAKCQFAHWRQGHKDKCHPPGTARQSQADNLECDIGKKVVEPDHRGINDEKSRVESPEDRTSSEKPPFSDVKPPKISCAANDNARVESLAEENTADSNSELSCNSFSGFSASTGANESSDDSSGCESIISNEHVRSEGHICTDPTFDDLDNTSNGHSIGATIPLSPKFASLVDSVIPVFGKEEIKLTSNGRSGLTTQKGGTTEPSNASSEFWNCTLDLKGTKDDSFADTLPSHSNESRTKSVGKNIPHAGSGSGSFQNEGLVSSRRADASSINNSYTVASKVSNHVTINPRSSLRSTEVSCFPRTSADSKLVSKDEEEEHIHYSSKCKKNGTRSGTACPVQVANCSPNSKDGLKASVLKVVDHDQFRGSNLSKHFPVAVGGDIAGKYSDKGLFPYDLFVKLYNWNRAEFQPFGLTNCGNSCYANAVLQCLVFTPPLTAYLLQGLHSKSCASKKWCFTCEFESLILKSKDTKFPLSPIGILSQLQSIGSQLGNGREEDAHEFLRHVVETMQSVCLMECGVDASDALKEQTNLVGLTFGGYLRSKIQCMKCGGKSERQERMMDLTVEIEGEITSLEEALKQFTSTETLDGENKYHCGRCKSYEKAKKQMAVSEAPNVLTIALKRFRSGKFGKLNKSIRFPEILDLAPFMSGTSDLAIYRLYGVVVHLDTMNAAFSGHYVGYVKNFQNSWFKVDDSVVTPVELETVLTKGAYMLLYARCSPRAPRLIRDMIVSSDSKSKVNGKSVIMKHKHASSHSGSAERIMSNSISSCGLPTLETIHSKFHHMKSIMEEDSSSDNSSLISNNSDECSCSTDSTCDSTGTDEFADYIFGNSVRGGGGDSCTSSRVDIDSHLYRRRPVNVERSEGGVSHLHHNTSIEHRKLDTCRSSSSFRESDSFERAGSNHFSHINSGVSYRKTRERKD* 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2226 1048 Pfam MYND finger 110 147 IPR002893 -
Mtr5g2226 1048 Gene3D Cysteine proteinases 535 854 - -
Mtr5g2226 1048 ProSiteProfiles Zinc finger MYND-type profile. 110 147 IPR002893 -
Mtr5g2226 1048 MobiDBLite consensus disorder prediction 169 196 - -
Mtr5g2226 1048 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 542 846 IPR028889 -
Mtr5g2226 1048 MobiDBLite consensus disorder prediction 169 206 - -
Mtr5g2226 1048 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 543 558 IPR018200 GO:0004843|GO:0006511
Mtr5g2226 1048 MobiDBLite consensus disorder prediction 358 389 - -
Mtr5g2226 1048 SUPERFAMILY Cysteine proteinases 539 849 IPR038765 -
Mtr5g2226 1048 Gene3D - 92 150 - -
Mtr5g2226 1048 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 19 1031 - -
Mtr5g2226 1048 SUPERFAMILY HIT/MYND zinc finger-like 106 149 - -
Mtr5g2226 1048 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 1031 - -
Mtr5g2226 1048 Pfam Ubiquitin carboxyl-terminal hydrolase 542 843 IPR001394 GO:0004843|GO:0016579
Mtr5g2226 1048 ProSitePatterns Zinc finger MYND-type signature. 110 147 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2226 Mtr-Chr5 29143101 29151183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2226 522 850 Miscellaneous Gene Families AT4G31670 51.057 1.64e-118 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2226 K11855 - gmx:100782303 1213.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2226 5 29143101 29151183 Mtr5g2226 5 29143101 29151183 ECH